PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G200000.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 347aa MW: 38622.8 Da PI: 7.1302

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G200000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.9	1.5e-14	76	163	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ +++s+k qCk++++ ++k+yk +k+ ++ + s +p+fd l+ Potri.003G200000.1 76 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVsSREDYSKSSKidiQCKNRIDTVKKKYKLEKAKIASG--GGPSGWPFFDPLD 163 7***********************************87788988875555*****************98..56667***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.9E-24	74	165	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MEDDDEIQSH SNTTEYSSPS PPPPNGRITV SAPAAVHPQP VPPPPQQNNK NRLALVLPTK 60 PKVNGGGGGG GGREDCWSEG ATAVLIDAWG ERYLELSRGN LKQKHWKEVA EIVSSREDYS 120 KSSKIDIQCK NRIDTVKKKY KLEKAKIASG GGPSGWPFFD PLDRLIGSTA RIPVVGNGNV 180 GGKIPTRVRS GSRRGGVNQY HFRNQNVKIR ILKHEEDEDD EEEGEEEEGG AESDDSFPPM 240 KKRRVVVERE DVTQAMVKFG EAYEQAESAK LQQVVEMEKT RMEFVKELEL QRMQFFMQTQ 300 MGISQLKNAR RGGNATSNHY HHQYHRHHTG NNINASNNVN NSDSDN*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MEDDDEIQSH SNTTEYSSPS PPPPNGRITV SAPAAVHPQP VPPPPQQNNK NRLALVLPTK  60
PKVNGGGGGG GGREDCWSEG ATAVLIDAWG ERYLELSRGN LKQKHWKEVA EIVSSREDYS  120
KSSKIDIQCK NRIDTVKKKY KLEKAKIASG GGPSGWPFFD PLDRLIGSTA RIPVVGNGNV  180
GGKIPTRVRS GSRRGGVNQY HFRNQNVKIR ILKHEEDEDD EEEGEEEEGG AESDDSFPPM  240
KKRRVVVERE DVTQAMVKFG EAYEQAESAK LQQVVEMEKT RMEFVKELEL QRMQFFMQTQ  300
MGISQLKNAR RGGNATSNHY HHQYHRHHTG NNINASNNVN NSDSDN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G200000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452781.1	1e-169	trihelix transcription factor ASIL2
Swissprot	Q9LJG8	2e-83	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A3N7EQC3	0.0	A0A3N7EQC3_POPTR; Uncharacterized protein
STRING	POPTR_0003s19840.1	1e-162	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7919	30	44
Representative plant	OGRP487	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	6e-51	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Potri.003G200000.1