PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G198800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 366aa    MW: 40652.2 Da    PI: 9.1914
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G198800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.78.4e-1576163186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ +++s+k   qCk++++ ++k+yk +k+   ++  +  s +p+fd l+
  Potri.003G198800.1  76 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVsSREDYSKSSKtdiQCKNRIDTVKKKYKLEKAKIASG--GGPSGWPFFDPLD 163
                         7*************************************855566655433339********************98..56667*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-2574165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEDDDEIQSH SNTTEYSSPS PPPPNGRITV SAPAAVHPQP APPPPQQNNK NRLALVLPTK  60
PKVNGGGGGG GGREDCWSEG ATAVLIDAWG ERYLELSRGN LKQKHWKEVA EIVSSREDYS  120
KSSKTDIQCK NRIDTVKKKY KLEKAKIASG GGPSGWPFFD PLDRLIGSTA RIPVVGNGNV  180
GSKIPTRVRS GSRRGGVNQY HFRNQNVKIR ILKHEDDEDD EEEGEEEEGG AESDDSFPPM  240
KKRRVVVERE VRGKVGKEKR GGGWGNSIRM LTQAMVKFGE AYEQAESAKL QQVVEMEKTR  300
MEFVKELELQ RMQFFMQTQM GISQLKNARR GGNATSNHYH HQYHRHHTGN NINASNNVNN  360
SDSDN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G198800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452781.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG81e-87ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2K2B9V50.0A0A2K2B9V5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s19840.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.14e-51sequence-specific DNA binding transcription factors