PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G195300.2 | ||||||||
Common Name | POPTR_0003s19470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 326aa MW: 35600.5 Da PI: 10.2462 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 33.8 | 8.8e-11 | 54 | 116 | 1 | 59 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnk 59 +W++ v +L+ea+++++ +r+klk+++We+v+ ++ ++ ++++qCk+k+e+++k Potri.003G195300.2 54 EWSEGAVSTLLEAYENKWILRNRAKLKGHDWEDVAHHVssraNCTKSPKTQTQCKNKIESMKK 116 5*************************************854444555566679*******998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.7E-13 | 52 | 117 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MDKETNRESP SLLPSNTTTI KEESPRKLLG GTGAAGVVVS GGGGGGGDRL KRDEWSEGAV 60 STLLEAYENK WILRNRAKLK GHDWEDVAHH VSSRANCTKS PKTQTQCKNK IESMKKSATA 120 AVTPSPQVPP QHQQPSIPTS ANPPLMLLMD QSPLAVTQPP APAPPPPPLP PPLPHQTIGT 180 AQNSHGSNGV DRGAKGDGMD TKLSDHVSDK NAMDTDSSTP ALYSDKEKLR SKKLKKKMEK 240 RKRRKREEWE MADSIRWLAE VVVRSEQARM DTMRELEKMR IEAEAKRGEM DLKRTEIIAN 300 TQLEIAKLFA GVGRGVDSSL RIGKT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 244 | KRKRRK |
2 | 239 | 245 | KRKRRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G195300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU225573 | 1e-111 | CU225573.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020419.1 | 1e-173 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A2I4KKZ2 | 1e-178 | A0A2I4KKZ2_POPTR; Trihelix family protein | ||||
STRING | POPTR_0003s19470.1 | 1e-180 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 7e-79 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G195300.2 |
Entrez Gene | 7460246 |