PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G195300.1
Common NamePOPTR_0003s19470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 353aa    MW: 38706.9 Da    PI: 10.2334
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G195300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.74.1e-1554137186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  v +L+ea+++++   +r+klk+++We+v+ ++      ++  ++++qCk+k+e+++kry+ +  ++        s++p++ +l+
  Potri.003G195300.1  54 EWSEGAVSTLLEAYENKWILRNRAKLKGHDWEDVAHHVssraNCTKSPKTQTQCKNKIESMKKRYRSESSTADA------SSWPLYPRLD 137
                         5*************************************854444555566679*************99988886......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-1952137No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDKETNRESP SLLPSNTTTI KEESPRKLLG GTGAAGVVVS GGGGGGGDRL KRDEWSEGAV  60
STLLEAYENK WILRNRAKLK GHDWEDVAHH VSSRANCTKS PKTQTQCKNK IESMKKRYRS  120
ESSTADASSW PLYPRLDLLL RGNSATAAVT PSPQVPPQHQ QPSIPTSANP PLMLLMDQSP  180
LAVTQPPAPA PPPPPLPPPL PHQTIGTAQN SHGSNGVDRG AKGDGMDTKL SDHVSDKNAM  240
DTDSSTPALY SDKEKLRSKK LKKKMEKRKR RKREEWEMAD SIRWLAEVVV RSEQARMDTM  300
RELEKMRIEA EAKRGEMDLK RTEIIANTQL EIAKLFAGVG RGVDSSLRIG KT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266271KRKRRK
2266272KRKRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G195300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2255731e-152CU225573.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303935.30.0trihelix transcription factor ASIL2
TrEMBLA0A2K2B9N80.0A0A2K2B9N8_POPTR; Uncharacterized protein
STRINGPOPTR_0003s19470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Representative plantOGRP44091421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-97sequence-specific DNA binding transcription factors