PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G190000.1
Common NamePOPTR_0003s18930g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 648aa    MW: 73596.5 Da    PI: 8.406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G190000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08590634345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                          W++  +  lv+a k ++++   +W+++++ ++ g+t +qck ++ 
  Potri.003G190000.1 590 VWSAVQERALVQALKTFPKEtsqRWERVSAAVP-GKTINQCKKKFA 634
                         6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1109.9E-2193197IPR001623DnaJ domain
SMARTSM002715.6E-1495170IPR001623DnaJ domain
SuperFamilySSF465651.96E-1995202IPR001623DnaJ domain
PfamPF002262.2E-1796175IPR001623DnaJ domain
PROSITE profilePS5007618.30396178IPR001623DnaJ domain
CDDcd062571.42E-1296167IPR001623DnaJ domain
PRINTSPR006253.9E-8101119IPR001623DnaJ domain
PRINTSPR006253.9E-8119134IPR001623DnaJ domain
PRINTSPR006253.9E-8150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.924455510IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.2E-4455502IPR009057Homeodomain-like
SuperFamilySSF466898.22E-7457503IPR009057Homeodomain-like
SMARTSM007171.3E-5459512IPR001005SANT/Myb domain
CDDcd001678.18E-4462502No hitNo description
PROSITE profilePS500906.888583633IPR017877Myb-like domain
SMARTSM007173.8E-8587639IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-5587633IPR009057Homeodomain-like
SuperFamilySSF466891.35E-8589645IPR009057Homeodomain-like
PfamPF002495.4E-7590633IPR001005SANT/Myb domain
CDDcd001673.04E-5591637No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MAIQTSLRLI SYSQELVDGQ PLHVSSNGLP IKALKFEPAG HAFHTAALKL LGWEEEGTKT  60
EDQKVSNDKQ QSYMPSSESY STKGKKKSGS GDTQQDHYAL LGLGHLRYLA TEEQIRKSYR  120
EVALKYHPDK QAAILLAEES EAAKQAKKDE IESHFKAIQE AYEALIDPVK RRIYDSTDEF  180
DDEIPTDCAP QDFFKVFGPA FMRNGRWSVN QTVPSLGDEK TSLKEVDSFY NFWYSFKSWR  240
EFPHADEFDL EEAESRDHKR WMERQNAKLS EKARKEDYAR IRTLVDSAYK RDPRILRRKE  300
EEKAEKQRKK EAKYLAKRLQ EEEAARAAEE EKRQKEEEEK RVAEAALQQK KLKEKEKKLL  360
RKERSRLRTL SGSVLSQCLL NLSEADVENL CMSLDIEQLR SLCDRIEGKE VLEQAKVLRD  420
ACGCDHDSGS SKQEEKKISQ QNGSLNSNGS SPLSSSGKKE KPWGREEIEL LRKGTQKYPK  480
GTSRRWEVIS DYIGTGRSVE EILKATKTVL LQKPDSAKAF NSFLEKRKPA QSIESPLSTR  540
EEIEGASTVQ ALESSAAKVA QEESSSDTDK QKTDDVVTAN GVSSSADQDV WSAVQERALV  600
QALKTFPKET SQRWERVSAA VPGKTINQCK KKFALLKESF RNKKNTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-2019229520123Zuotin
5dje_B4e-2019229520123Zuotin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.144160.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G190000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2227300.0CU222730.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303963.10.0dnaJ homolog subfamily C member 2
RefseqXP_024453318.10.0dnaJ homolog subfamily C member 2
RefseqXP_024453319.10.0dnaJ homolog subfamily C member 2
TrEMBLB9GXK50.0B9GXK5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s18930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain