PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G168900.2
Common NamePOPTR_0003s16730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 599aa    MW: 69380.4 Da    PI: 9.9688
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G168900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.11.9e-08392431345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +WT+eE +l+ + ++++G++ Wkt a+ +g  + + ++k+ w+
  Potri.003G168900.2 392 SWTPEEYDLIRKFHEKHGSD-WKTLAEALG--KHRFHVKDTWR 431
                         7*******************.********9..56777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.94316387IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-5319406IPR009057Homeodomain-like
PROSITE profilePS500906.934385434IPR017877Myb-like domain
SuperFamilySSF466892.18E-8389444IPR009057Homeodomain-like
SMARTSM007170.4389436IPR001005SANT/Myb domain
PfamPF139212.8E-12393451No hitNo description
Gene3DG3DSA:1.10.10.601.3E-8407444IPR009057Homeodomain-like
PROSITE profilePS500907.387435503IPR017877Myb-like domain
SMARTSM007172.2439505IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-6445504IPR009057Homeodomain-like
SuperFamilySSF466891.5E-5483565IPR009057Homeodomain-like
PROSITE profilePS500907.039505558IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MLMQQARVRR RRRRQRRRKK RKLEHVNNEK ESQVSKKKNK MSEVREALGE THMRIDDNLG  60
LQKNVQVDFV SNSESEVRRD RKKNHKEKNR EGKAITVSSV LNSVDDNRRG EVFEVQKGPR  120
NEDIANMNNR EGQGRKKEKK RKQNKYDDGS GDTEIVKSVA DGKDAGREES IEVVQDKVES  180
SKKEKKKKKK KLNVVLEAAS MQIMAETTGN QNSVIEGDGG NRSSIKNKAR DGKLKVNAEG  240
GNKRKKKAKS LENRSKEKSS ERVTEMEEDA ESTRPSEKSL SKVTSKRVSF CEDVEIFPSS  300
DGPSDKKAVG EDGFVRGKRF SLEEDEMVKE AVLNYINVHG LGADGLNMVL NCKKHPAIKH  360
CWKEIGAALP WRPRESVYYR AHILFERDQN SSWTPEEYDL IRKFHEKHGS DWKTLAEALG  420
KHRFHVKDTW RRIKLINMKK GKWSQDEYQS LFDSVNLDLR LKAFVERKTK HGMLRDNISW  480
TAISEKLETR TDALCCQKWY DQLTSPMVAE GKWLDTDDYR LLMELYDLDA CCMEDVDWDN  540
LLEHRSGDLC RKRWNQMVKH LGDHRNKSFA DQVDVLINRY CHDVLEAREA YNSKPAVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1613RVRRRRRR
2815RRRRRRQR
3816RRRRRRQRR
4819RRRRRRQRRRKK
5916RRRRRQRR
6919RRRRRQRRRKK
7922RRRRRQRRRKKRKL
81020RRRRQRRRKKR
91021RRRRQRRRKKRK
101118RRRQRRRK
111217RRQRRR
121421QRRRKKRK
131520RRRKKR
141521RRRKKRK
15135142KKEKKRKQ
16181189KKEKKKKKK
17183191EKKKKKKKL
18184190KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.25680.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G168900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303776.30.0RNA polymerase I termination factor
TrEMBLA0A2K2B8D00.0A0A2K2B8D0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-133MYB_related family protein