PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G168900.1
Common NamePOPTR_0003s16730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 698aa    MW: 79654.7 Da    PI: 9.6926
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G168900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08491530345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +WT+eE +l+ + ++++G++ Wkt a+ +g  + + ++k+ w+
  Potri.003G168900.1 491 SWTPEEYDLIRKFHEKHGSD-WKTLAEALG--KHRFHVKDTWR 530
                         7*******************.********9..56777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.94415486IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-5418498IPR009057Homeodomain-like
PROSITE profilePS500906.934484533IPR017877Myb-like domain
SMARTSM007170.4488535IPR001005SANT/Myb domain
SuperFamilySSF466892.84E-8488543IPR009057Homeodomain-like
PfamPF139213.4E-12492550No hitNo description
Gene3DG3DSA:1.10.10.605.2E-7499507IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-8508550IPR009057Homeodomain-like
PROSITE profilePS500907.387534602IPR017877Myb-like domain
SMARTSM007172.2538604IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-7578601IPR009057Homeodomain-like
SuperFamilySSF466891.88E-5582664IPR009057Homeodomain-like
PROSITE profilePS500907.039604657IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MSTKTVGRQQ HEKRKTKNED DSLKAKDSLL VSGGEGLTLN SECKKKTKKK KSEGHEDSIE  60
DSAVSSSLSE GNVNAAGKGE KKEKKTKKKS EKYELVSSSL SEGNVDLNNV ADKKEKKKKR  120
KLEHVNNEKE SQVSKKKNKM SEVREALGET HMRIDDNLGL QKNVQVDFVS NSESEVRRDR  180
KKNHKEKNRE GKAITVSSVL NSVDDNRRGE VFEVQKGPRN EDIANMNNRE GQGRKKEKKR  240
KQNKYDDGSG DTEIVKSVAD GKDAGREESI EVVQDKVESS KKEKKKKKKK LNVVLEAASM  300
QIMAETTGNQ NSVIEGDGGN RSSIKNKARD GKLKVNAEGG NKRKKKAKSL ENRSKEKSSE  360
RVTEMEEDAE STRPSEKSLS KVTSKRVSFC EDVEIFPSSD GPSDKKAVGE DGFVRGKRFS  420
LEEDEMVKEA VLNYINVHGL GADGLNMVLN CKKHPAIKHC WKEIGAALPW RPRESVYYRA  480
HILFERDQNS SWTPEEYDLI RKFHEKHGSD WKTLAEALGK HRFHVKDTWR RIKLINMKKG  540
KWSQDEYQSL FDSVNLDLRL KAFVERKTKH GMLRDNISWT AISEKLETRT DALCCQKWYD  600
QLTSPMVAEG KWLDTDDYRL LMELYDLDAC CMEDVDWDNL LEHRSGDLCR KRWNQMVKHL  660
GDHRNKSFAD QVDVLINRYC HDVLEAREAY NSKPAVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120KKKKRK
2116121KKKRKL
3234241KKEKKRKQ
4280288KKEKKKKKK
5282290EKKKKKKKL
6283289KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.25680.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G168900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303776.30.0RNA polymerase I termination factor
TrEMBLA0A2K2B8D00.0A0A2K2B8D0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Representative plantOGRP53221418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-133MYB_related family protein