PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.003G164500.1 | ||||||||
Common Name | POPTR_0003s16300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25957.5 Da PI: 10.1409 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.6e-09 | 171 | 217 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ +Er RR++i s++ L++l+P + +k Ka +L + + Y++ L Potri.003G164500.1 171 SHSLAERVRREKISSRMKLLQSLVPGC----DKITGKALVLDEIISYVQFL 217 8*************************9....899**************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.64E-8 | 165 | 222 | No hit | No description |
SuperFamily | SSF47459 | 5.1E-14 | 165 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.142 | 167 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-14 | 168 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 171 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-8 | 173 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MAVFSYQQQH PASVVDEFQL DSNTNIASGT LFSPNLPYEC LQESSLHAER ILETIHADDN 60 SIAKVPFIST TYHSSTTARH NSSSSMVADL QYCEENRVSQ AMTPTLWQLR KHSSPAIKVK 120 RESKRQKLNL NSSVSRNAKR VRPAKKQKKV PVEPPTGYVH VRARRGEATD SHSLAERVRR 180 EKISSRMKLL QSLVPGCDKI TGKALVLDEI ISYVQFLKDR VQVRINEDTA * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.003G164500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303756.2 | 1e-164 | transcription factor bHLH137 | ||||
TrEMBL | A0A3N7EW88 | 1e-163 | A0A3N7EW88_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s16300.1 | 1e-171 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16101 | 5 | 10 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50915.2 | 3e-39 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.003G164500.1 |
Entrez Gene | 7496539 |