PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G147200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 96aa MW: 11456.3 Da PI: 9.8932 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.1 | 2e-15 | 13 | 51 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +Fe+++ p e +++LA+++gL+ rqV +WFqNrRa+ k Potri.003G147200.1 13 FFESESRPELEIKQQLANEIGLEPRQVAIWFQNRRARLK 51 6999*********************************98 PP | |||||||
2 | HD-ZIP_I/II | 90.2 | 2.5e-29 | 13 | 84 | 17 | 88 |
HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 Fe+e++ e e K++la+e+gl+prqva+WFqnrRAR ktkq+Ek+y+ Lk++y+al+++ e+L++e+++L Potri.003G147200.1 13 FFESESRPELEIKQQLANEIGLEPRQVAIWFQNRRARLKTKQIEKEYSLLKANYEALASRFESLKRENQSLL 84 5889999999***********************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 5.3E-6 | 5 | 57 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.82E-13 | 13 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.8E-13 | 13 | 51 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.48E-9 | 13 | 54 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-15 | 13 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.815 | 14 | 53 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.3E-5 | 24 | 33 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 28 | 51 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.3E-5 | 33 | 49 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-14 | 53 | 87 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MLFFKEYNSW KLFFESESRP ELEIKQQLAN EIGLEPRQVA IWFQNRRARL KTKQIEKEYS 60 LLKANYEALA SRFESLKREN QSLLIHVPFF FVVGL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 53 | RRARLKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}. | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G147200.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087179.1 | 7e-35 | homeobox-leucine zipper protein ATHB-7 | ||||
Swissprot | P46897 | 1e-24 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
Swissprot | Q9M276 | 9e-25 | ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | A0A2K2B796 | 7e-61 | A0A2K2B796_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s14700.1 | 3e-42 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40086 | 2 | 2 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 4e-27 | homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G147200.1 |
Publications ? help Back to Top | |||
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