PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G136300.1 | ||||||||
Common Name | POPTR_0003s13610g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 351aa MW: 39010.2 Da PI: 6.0119 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.7e-19 | 127 | 178 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g+ Potri.003G136300.1 127 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRGA 178 59********.**********72....45*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.30E-31 | 127 | 184 | No hit | No description |
Pfam | PF00847 | 2.5E-12 | 128 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-21 | 128 | 185 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 128 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 128 | 185 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-35 | 128 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 129 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 151 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MKMDHPVKFT EHRNQTKLSA PFLSNPVQYS KPPKIVRISV TDTYATDSSS DEENEVSRVS 60 SRKRHVTRVK KFVNEITIEP SAPPSRTADC VTSDTGLRAR PSRSARKKVG VDVSQARRLP 120 ATGVVGKKFR GVRQRPWGKW AAEIRDPLRR VRLWLGTYDT AEEAAMVYDN AAIQLRGADA 180 LTNFVTPPAR CSPAAATSGY ISGDESNSNH NINNDNVNVS SPISVLRFSE EAESQSVGSS 240 RETRKTGNEV REVKEDSCVS ENFSDFSEHN SSIDSLFPPT TDIYEFRSSV RGIFEETTIF 300 ADGGFLKDDD FRDMDLDFGF GFGFGLSSWN VQDHFQDIGD LFWSDSLIAI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-20 | 126 | 184 | 3 | 62 | ATERF1 |
3gcc_A | 4e-20 | 126 | 184 | 3 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G136300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303625.2 | 0.0 | ethylene-responsive transcription factor CRF1 | ||||
TrEMBL | A0A2K2B6M7 | 0.0 | A0A2K2B6M7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s13610.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 1e-47 | cytokinin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G136300.1 |
Entrez Gene | 7497822 |