PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G120200.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 288aa MW: 30533 Da PI: 7.0602

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G120200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.2	4.2e-32	70	135	2	67
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtss 67 + ++++++++hTkv+gR+RR+R++a+c ar+F+L++eLG+ +d++t+ WLl+ a++ai+e+tgt++ Potri.003G120200.1 70 TIRRSSTKDRHTKVEGRGRRIRIPATCSARIFQLTRELGHSSDGETVRWLLEHAEQAIIEATGTGT 135 7899************************************************************54 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.1E-26	75	135	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.965	76	130	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MASFQEHEVD LDDEGGTSDL STNAGDLEDN RNNNSGNNRT LPKMGVVPLA MQMPMPMSIP 60 MPMPVTTIAT IRRSSTKDRH TKVEGRGRRI RIPATCSARI FQLTRELGHS SDGETVRWLL 120 EHAEQAIIEA TGTGTVLAIA LLLPTPQGSV PVFAVGNNWM MVPANAFWMI LHAAAAGTPT 180 AAPIFAACSN QQIRALSPSL TPVFNVAAAW PISPFVASTN GGNQTGVNIA AASVVEIPSG 240 VEFRAPSPVV ASTSVGVQVA KKSTMAWRLI YDMLELQLTG RPGINQP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.13026	1e-157	bud\| catkin

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G120200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011029153.1	1e-104	PREDICTED: transcription factor TCP9-like
TrEMBL	A0A2K2B5U2	0.0	A0A2K2B5U2_POPTR; Uncharacterized protein
STRING	XP_008238772.1	3e-72	(Prunus mume)
STRING	EMJ12256	4e-72	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86
Representative plant	OGRP3178	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	5e-37	TCP family protein

Link Out ? help Back to Top
Phytozome	Potri.003G120200.1