PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G118100.1 | ||||||||
Common Name | POPTR_0003s11800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRF | ||||||||
Protein Properties | Length: 202aa MW: 22309.4 Da PI: 10.2676 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74 | 1.6e-23 | 134 | 177 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++l+ +k+C+rH+hrgr+rsrk e Potri.003G118100.1 134 DPEPGRCRRTDGKKWRCSKEALPYQKYCDRHIHRGRQRSRKLEE 177 79**************************************9754 PP | |||||||
2 | QLQ | 30.4 | 1.2e-11 | 65 | 99 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+y y+ a+ PvP +L+++i++ Potri.003G118100.1 65 FTVLQLQELQLQSLIYTYIQAGFPVPYHLVLPIWR 99 8888*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51666 | 16.359 | 64 | 99 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.3E-8 | 65 | 98 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.182 | 134 | 178 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.2E-20 | 135 | 175 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MESQAPPPKF ARLSNSRTRL ASGWNVERNR RDGESGSPPI GLGLELGRGG SSQRPIISCK 60 KPYGFTVLQL QELQLQSLIY TYIQAGFPVP YHLVLPIWRS VATSLGGLSS RLYQLYPSLM 120 GCNPLYLAYK NGMDPEPGRC RRTDGKKWRC SKEALPYQKY CDRHIHRGRQ RSRKLEESAS 180 HGNSSTDLSI SLPAGISGAS A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G118100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385746.1 | 1e-146 | growth-regulating factor 10 isoform X1 | ||||
Swissprot | Q6AWX7 | 3e-41 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | U5GJ98 | 1e-144 | U5GJ98_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s11800.1 | 1e-145 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-27 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G118100.1 |
Entrez Gene | 18097029 |
Publications ? help Back to Top | |||
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