PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G104500.1
Common NamePOPTR_0003s10360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 301aa    MW: 35284.8 Da    PI: 8.055
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G104500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.61.4e-2244126186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W  qe+++ i +r  +e+++  +k++++lWe vs+kmre+g+ +r+p+qCk+kw+nl   yk  ++++ +    + ++cp+f++l+
  Potri.003G104500.1  44 QWGLQETKEFIGIRAGLEKDFAVTKRNETLWEIVSAKMREKGYyRRTPEQCKCKWKNLVSLYKGKETSDPE----TGRQCPFFEELH 126
                         7*****************************************9788******************9999997....4678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-1943127No hitNo description
CDDcd122037.70E-2143109No hitNo description
PROSITE profilePS500906.51645102IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMFRSGGGEG DAGLGWINMM PTAAMLSPTA EISPRGPAPP QHPQWGLQET KEFIGIRAGL  60
EKDFAVTKRN ETLWEIVSAK MREKGYYRRT PEQCKCKWKN LVSLYKGKET SDPETGRQCP  120
FFEELHEVFT ERAKNMQRLL LESEAGSTQS RKKVKRINGD RSSDELSEDE DEDESEEEKP  180
ARNNSRKRKG EKNVAEKSPR PSSSSFGGVQ EMLKEFFQQQ QKMEMQWREL MEKRAHERQM  240
FEQEWRRSMD KLERERLMIE QAWREREEQR RIREESRAER RDALLTALLN KLISENTMKD  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G104500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304391.30.0trihelix transcription factor GT-3b
TrEMBLA0A2K2B4V50.0A0A2K2B4V5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s10360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-33Trihelix family protein