PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G103500.1
Common NamePOPTR_0003s10250g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 303aa    MW: 33879.6 Da    PI: 6.5983
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G103500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM805e-2517058128
                 NAM  58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +yfF++r++ky++g+r+nra++ gyWkatgkdk+v+  +g+ vg +ktL fy+g+a +gektdW mhe+++
  Potri.003G103500.1   1 MYFFTPRNRKYRNGSRPNRAADGGYWKATGKDKTVKY-RGTPVGKRKTLEFYTGKALQGEKTDWKMHEFTV 70 
                         5***********************************9.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.864199IPR003441NAC domain
PfamPF023654.6E-11269IPR003441NAC domain
SuperFamilySSF1019411.31E-31299IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MYFFTPRNRK YRNGSRPNRA ADGGYWKATG KDKTVKYRGT PVGKRKTLEF YTGKALQGEK  60
TDWKMHEFTV NDPAPIHQVR NTRDYMRLDD WVLCKIYKKS KKPKDVRNRQ RDEENSTLTA  120
MDNADYVNNH DEDRTDLPVM DAGYVGEMDN VGADAVFTHD YSQQQIASSE FPADFNLHAA  180
SYSGMFPSLA ETCGDPASVF SNSDNLSTLD DLLNPANFHW NIDDPFFDLH TSVPNNIPGN  240
PVPAPGNIAN PASPCNLPAA NHVPSSRYLP SAYLAPPGHQ ILQPVSQLQQ QMLCQKTACS  300
NE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-3029974165NO APICAL MERISTEM PROTEIN
1ut4_B9e-3029974165NO APICAL MERISTEM PROTEIN
1ut7_A9e-3029974165NO APICAL MERISTEM PROTEIN
1ut7_B9e-3029974165NO APICAL MERISTEM PROTEIN
3swm_A9e-3029977168NAC domain-containing protein 19
3swm_B9e-3029977168NAC domain-containing protein 19
3swm_C9e-3029977168NAC domain-containing protein 19
3swm_D9e-3029977168NAC domain-containing protein 19
3swp_A9e-3029977168NAC domain-containing protein 19
3swp_B9e-3029977168NAC domain-containing protein 19
3swp_C9e-3029977168NAC domain-containing protein 19
3swp_D9e-3029977168NAC domain-containing protein 19
4dul_A9e-3029974165NAC domain-containing protein 19
4dul_B9e-3029974165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G103500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304383.20.0NAC domain-containing protein 2
TrEMBLB9GZX00.0B9GZX0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s10250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2827733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-33NAC-like, activated by AP3/PI