PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G100800.4

Common Name

POPTR_0003s10000g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRF

Protein Properties

Length: 343aa MW: 38089.6 Da PI: 9.3599

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G100800.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.4	5.1e-23	79	123	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++r+r+rsrk++e+ Potri.003G100800.4 79 DSEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRSRNRSRKPVES 123 689***************************************986 PP
2	QLQ	56.6	7.7e-20	19	53	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT +Q+++L++Q+l++K+L+a++PvPp Ll++i+k Potri.003G100800.4 19 FTMSQWHELEHQVLIFKCLNAGLPVPPSLLLPIRK 53 *********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.2E-11	17	53	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.256	18	53	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.0E-15	19	52	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.45	79	123	IPR014977	WRC domain
Pfam	PF08879	1.1E-19	81	122	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MSNSSVTVAG VGSRSPPGFT MSQWHELEHQ VLIFKCLNAG LPVPPSLLLP IRKSFQLLSP 60 GFLHPSNLSY CSYFGKKIDS EPGRCRRTDG KKWRCSKDAH PDSKYCERHM NRSRNRSRKP 120 VESQTTSQSL STVASEIATG SSSIGSRGYP TNPGTLGLGS NMSRWQMESM PYGVNSKDYR 180 SLHGPKPEAD EKTFLPEALG NTRSFGMNST VDSTWHLTSQ VPANRVPESR NGSLLQNYPQ 240 VQTLQDFEPL TVDAASPKQQ QQQHYLFGRE FSSSGSMRRE NQSLQPLFDE WPKCRDMDSH 300 LTDQRSNNNS SAVQLSMAIP MAPNPAARSY HSPNVSEHGM LH*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MSNSSVTVAG VGSRSPPGFT MSQWHELEHQ VLIFKCLNAG LPVPPSLLLP IRKSFQLLSP  60
GFLHPSNLSY CSYFGKKIDS EPGRCRRTDG KKWRCSKDAH PDSKYCERHM NRSRNRSRKP  120
VESQTTSQSL STVASEIATG SSSIGSRGYP TNPGTLGLGS NMSRWQMESM PYGVNSKDYR  180
SLHGPKPEAD EKTFLPEALG NTRSFGMNST VDSTWHLTSQ VPANRVPESR NGSLLQNYPQ  240
VQTLQDFEPL TVDAASPKQQ QQQHYLFGRE FSSSGSMRRE NQSLQPLFDE WPKCRDMDSH  300
LTDQRSNNNS SAVQLSMAIP MAPNPAARSY HSPNVSEHGM LH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.8483	1e-170	bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G100800.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006385702.2	0.0	growth-regulating factor 3 isoform X2
TrEMBL	A0A2K2B4N6	0.0	A0A2K2B4N6_POPTR; Uncharacterized protein
STRING	POPTR_0003s10000.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-38	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Potri.003G100800.4
Entrez Gene	18096998