PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.003G100100.2 | ||||||||
Common Name | POPTR_0003s09940g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 280aa MW: 31647.9 Da PI: 10.1812 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.6 | 1.2e-32 | 27 | 81 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Potri.003G100100.2 27 RPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 81 59****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.231 | 24 | 84 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-31 | 24 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.09E-16 | 27 | 84 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.2E-24 | 28 | 82 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.3E-9 | 29 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-22 | 123 | 169 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 280 aa Download sequence Send to blast |
MEKTTFGGGG GSYPYENGVV MMTRDPRPRL RWTADLHDRF VDAVTKLGGP DKATPKSVLR 60 LMGLKGLTLY HLKSHLQKYR LGQQARRQNN TEQSKESRVR APQGQAPVHQ ESMKNKVQYR 120 EISVAEALNC QIEVQKTLQE KLEVQKKLQM RIEAQGKYLQ AILEKAQKSL SQNLNDDSNG 180 KLKATRAHLT GFNSAVYSLM ENLNAEDRKP SITDLKGINM KENGPAMHIQ REGQTQETKD 240 VKHHLQGDSI HFDLNTKGNY DFVSANGSEL ELKMLSYRR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-19 | 27 | 80 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-19 | 27 | 80 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-19 | 27 | 80 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-19 | 27 | 80 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.003G100100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452915.1 | 0.0 | myb family transcription factor PHL11 | ||||
TrEMBL | A0A2K2B4M5 | 0.0 | A0A2K2B4M5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s09940.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45580.1 | 7e-73 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.003G100100.2 |
Entrez Gene | 7465465 |