PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G093600.1
Common NamePOPTR_0003s09240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 370aa    MW: 39881.8 Da    PI: 6.7238
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G093600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-0893117126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC+ f++ GtC+y  +C+FaH+
  Potri.003G093600.1  93 FKTKLCCKFRA-GTCPYITNCNFAHS 117
                         69*********.*************8 PP
2zf-CCCH18.53.5e-06165190126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         yk + C+ f+    C+yGd+C+F H+
  Potri.003G093600.1 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190
                         78888********************7 PP
3zf-CCCH42.97.8e-14249274126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C+ +  tG+C++G++C+FaHg
  Potri.003G093600.1 249 WKTRICNKWELTGYCPFGNKCHFAHG 274
                         8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.4E-1490125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-790123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8492119IPR000571Zinc finger, CCCH-type
SMARTSM003560.003592118IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-593117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-9162192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-7163192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23164192IPR000571Zinc finger, CCCH-type
SMARTSM003560.058164191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-17244278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-10245279IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-9248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981248276IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-11249274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDCNRDFSGG NVVHVIPISD PESWILNSSD SSSVWATEDD YRDWNNSDIL NDNASSNSNY  60
QSSTRSGSEP PNKKSKNNSQ ELNSKKSIGK MFFKTKLCCK FRAGTCPYIT NCNFAHSIEE  120
LRRPPPNWQD IVAAHEEEKG NTVDVREEFQ IPSIVGFGAE TQRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD EQSKNRESVA ISLGPGGYGG GSGAGAGAGV GVGVGVGGGG EGGGGNAGSN  240
AVNVKPSNWK TRICNKWELT GYCPFGNKCH FAHGVGELHR YGGGLVDTEA KDSSSVPVES  300
KQGGMPSKTP PETAVASVTS VPHSDVYHLG VSSQRSSILI QRSGQRTHEK WKGPDKISRI  360
YGDWIDDIE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.61140.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G093600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304341.20.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-129C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLB9GZ920.0B9GZ92_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-122C3H family protein