PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G050700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 270aa MW: 29453.2 Da PI: 4.7597 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.6e-19 | 87 | 137 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+eIr p++ + r++lg+f t+e+Aa+a++ a+++++g Potri.003G050700.1 87 PVYRGVRRRA-WGKWVSEIRQPRK---KSRIWLGTFPTPEMAARAHDVAALCIKG 137 68*****777.**********843...6***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.3E-14 | 87 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-32 | 88 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 88 | 146 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.5E-37 | 88 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.854 | 88 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 89 | 100 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.55E-33 | 89 | 147 | No hit | No description |
PRINTS | PR00367 | 2.3E-10 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MVFSIEILNI AWDNRKILLT PSLPPFSSQT SPQISVPEMN EESTSSSNST CNSPPPSLAT 60 TITNKLNKQN PIQQSSRSKV RDCSKHPVYR GVRRRAWGKW VSEIRQPRKK SRIWLGTFPT 120 PEMAARAHDV AALCIKGDSA ILNFPELADS LPRPVSVMPR DIQSAAAKAA AMVEFNSPSP 180 SSSLSSSSVT VSEDVAESEE EYLSEIVELP NIEGSFDSPD QSRIEFMLFD SVDGHGWVYP 240 PLDLCGEFSD QLLGLESLIS SNLAGSVLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 84 | 146 | 10 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G050700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303301.1 | 1e-168 | ethylene-responsive transcription factor TINY | ||||
Swissprot | Q9LYD3 | 5e-58 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2K2B1R8 | 0.0 | A0A2K2B1R8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s04920.1 | 1e-168 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-52 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G050700.1 |
Publications ? help Back to Top | |||
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