PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G022800.1 | ||||||||
Common Name | POPTR_0003s01720g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 193aa MW: 22215.1 Da PI: 4.9958 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.3 | 5.4e-31 | 5 | 123 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat.gk.d 89 lppGfrF P+deelvv++L++k++ +++ +vi+++d+y ++Pw+L+ k+ +e k++yf+s+r +nr+t++g Wk g+ + Potri.003G022800.1 5 LPPGFRFCPSDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWELDGKALSEGKQCYFYSRRT--------QNRITNNGCWKPMvGHvE 86 79*************************999.99**************977778899******984........589********6514457 PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++l++ +++lvg+kk ++fy a +g kt+W+m+ey l Potri.003G022800.1 87 EPILASeNNKLVGIKKYFIFY---AAEGIKTNWIMEEYLL 123 78887768888**********...899***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-40 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.701 | 5 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-19 | 6 | 122 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MAANLPPGFR FCPSDEELVV HFLHRKAALL PCHPDVIPDL DLYPYDPWEL DGKALSEGKQ 60 CYFYSRRTQN RITNNGCWKP MVGHVEEPIL ASENNKLVGI KKYFIFYAAE GIKTNWIMEE 120 YLLSEHRTSH DSSPSTKSSK TRARSKQDYS KWVICRVYER SYEEEEDGGK ELSCLDEVFL 180 SLEDLDEISL PN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-30 | 4 | 160 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-30 | 4 | 160 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-30 | 4 | 160 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-30 | 4 | 160 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-30 | 4 | 160 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-30 | 4 | 160 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.15560 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G022800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB970796 | 0.0 | AB970796.1 Populus tremula x Populus tremuloides PtxtNAC161 mRNA for NAC transcriptional factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002304078.1 | 1e-143 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 3e-79 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | B9GZS1 | 1e-141 | B9GZS1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s01720.1 | 1e-142 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 | Representative plant | OGRP4510 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-79 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G022800.1 |
Entrez Gene | 7478139 |
Publications ? help Back to Top | |||
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