PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G010400.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 359aa    MW: 41130.6 Da    PI: 6.3438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G010400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00056688323
                        ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                        C+   Cgk+F +   L++H   H
  Potri.003G010400.3 66 CSfeGCGKTFIDAGALRKHSHIH 88
                        77779**************7766 PP
2zf-C2H216.52.3e-0593117123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y+C+   Cgk F ++s LkrH   H
  Potri.003G010400.3  93 YVCHyeGCGKKFLDSSKLKRHFLIH 117
                         9********************8877 PP
3zf-C2H221.85.1e-07123147123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++Cp   Cgk Fs   nL++H++tH
  Potri.003G010400.3 123 FVCPheGCGKAFSLDFNLRSHMKTH 147
                         89**********************9 PP
4zf-C2H215.45.5e-05153177123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp   Cgk++ + + Lk+Hi +H
  Potri.003G010400.3 153 HICPysECGKRYAHEYKLKNHIASH 177
                         68*********************96 PP
5zf-C2H213.10.00029216241123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         y Cp   C k + + + Lk H+r+ H
  Potri.003G010400.3 216 YICPyeGCEKDYIHEYKLKLHLRReH 241
                         89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-145990IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7836493IPR007087Zinc finger, C2H2
SMARTSM003550.00376488IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806688IPR007087Zinc finger, C2H2
SuperFamilySSF576673.84E-866117No hitNo description
Gene3DG3DSA:3.30.160.602.2E-1491113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.92193122IPR007087Zinc finger, C2H2
SMARTSM003550.002493117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095117IPR007087Zinc finger, C2H2
SuperFamilySSF576674.36E-13108150No hitNo description
Gene3DG3DSA:3.30.160.603.4E-20114147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.695123152IPR007087Zinc finger, C2H2
SMARTSM003553.1E-4123147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125147IPR007087Zinc finger, C2H2
SuperFamilySSF576672.74E-8139179No hitNo description
Gene3DG3DSA:3.30.160.601.8E-8148179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949153182IPR007087Zinc finger, C2H2
SMARTSM003550.035153177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155178IPR007087Zinc finger, C2H2
SuperFamilySSF576672.15E-5211239No hitNo description
Gene3DG3DSA:3.30.160.604.8E-9211238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016216241IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.559216246IPR007087Zinc finger, C2H2
PROSITE patternPS000280218241IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVQRMLFYVW FLWRSRVPQD VVATGGKCSL FKWVAENQLN VLKEKAKEPP APEPEPEPTT  60
EVLFLCSFEG CGKTFIDAGA LRKHSHIHGE RQYVCHYEGC GKKFLDSSKL KRHFLIHTGE  120
RDFVCPHEGC GKAFSLDFNL RSHMKTHSQE NYHICPYSEC GKRYAHEYKL KNHIASHHEK  180
NPTPDVVRYA TPPERILKNP KPPSGVYGSA SSDRPYICPY EGCEKDYIHE YKLKLHLRRE  240
HPDHMADENA ENANSNADNE MDEASDQDAY GGKRVNGKSQ KHSRPKPNLK TPPVKIRQRK  300
GSSSSPATLN VVKKPWPVKD DTYEEDSEET EEEDHDNAED GWRYGGNEDD DEETEDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-34662374119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.110750.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G010400.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485070.0EF148507.1 Populus trichocarpa x Populus deltoides clone WS0131_N16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448008.10.0zinc finger transcription factor YY1, partial
SwissprotQ2V3L31e-144YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2K1R9590.0A0A2K1R959_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0022s00900.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-127C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]