PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G010400.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 346aa    MW: 39611.7 Da    PI: 6.2814
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G010400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004883105323
                         ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                         C+   Cgk+F +   L++H   H
  Potri.003G010400.2  83 CSfeGCGKTFIDAGALRKHSHIH 105
                         77779**************7766 PP
2zf-C2H222.33.5e-07110134123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y+C+   Cgk Fs   nL++H++tH
  Potri.003G010400.2 110 YVCHyeGCGKAFSLDFNLRSHMKTH 134
                         9***********************9 PP
3zf-C2H215.45.2e-05140164123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp   Cgk++ + + Lk+Hi +H
  Potri.003G010400.2 140 HICPysECGKRYAHEYKLKNHIASH 164
                         68*********************96 PP
4zf-C2H213.20.00027203228123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         y Cp   C k + + + Lk H+r+ H
  Potri.003G010400.2 203 YICPyeGCEKDYIHEYKLKLHLRReH 228
                         89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-1476106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78381110IPR007087Zinc finger, C2H2
SMARTSM003550.003781105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083105IPR007087Zinc finger, C2H2
SuperFamilySSF576671.0E-883134No hitNo description
Gene3DG3DSA:3.30.160.609.8E-14107133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.778110139IPR007087Zinc finger, C2H2
SMARTSM003557.2E-4110134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112134IPR007087Zinc finger, C2H2
SuperFamilySSF576673.04E-9120169No hitNo description
Gene3DG3DSA:3.30.160.606.7E-8134166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949140169IPR007087Zinc finger, C2H2
SMARTSM003550.035140164IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142165IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-9198225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.68E-5198226No hitNo description
PROSITE profilePS501578.559203233IPR007087Zinc finger, C2H2
SMARTSM003550.016203228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205228IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEAHHHHQFT HNIFERRPII KSKTPAVKWF KEWVPQDVVA TGGKCSLFKW VAENQLNVLK  60
EKAKEPPAPE PEPEPTTEVL FLCSFEGCGK TFIDAGALRK HSHIHGERQY VCHYEGCGKA  120
FSLDFNLRSH MKTHSQENYH ICPYSECGKR YAHEYKLKNH IASHHEKNPT PDVVRYATPP  180
ERILKNPKPP SGVYGSASSD RPYICPYEGC EKDYIHEYKL KLHLRREHPD HMADENAENA  240
NSNADNEMDE ASDQDAYGGK RVNGKSQKHS RPKPNLKTPP VKIRQRKGSS SSPATLNVVK  300
KPWPVKDDTY EEDSEETEEE DHDNAEDGWR YGGNEDDDEE TEDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C8e-20832248117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.110750.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G010400.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485070.0EF148507.1 Populus trichocarpa x Populus deltoides clone WS0131_N16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454063.10.0zinc finger transcription factor YY1 isoform X2
SwissprotQ2V3L31e-135YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2K2AZU40.0A0A2K2AZU4_POPTR; Uncharacterized protein
STRINGPOPTR_0022s00900.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]