PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G010400.1
Common NamePOPTR_0022s00900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 376aa    MW: 43079.7 Da    PI: 6.5398
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G010400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005383105323
                         ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                         C+   Cgk+F +   L++H   H
  Potri.003G010400.1  83 CSfeGCGKTFIDAGALRKHSHIH 105
                         77779**************7766 PP
2zf-C2H216.52.5e-05110134123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y+C+   Cgk F ++s LkrH   H
  Potri.003G010400.1 110 YVCHyeGCGKKFLDSSKLKRHFLIH 134
                         9********************8877 PP
3zf-C2H221.75.4e-07140164123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++Cp   Cgk Fs   nL++H++tH
  Potri.003G010400.1 140 FVCPheGCGKAFSLDFNLRSHMKTH 164
                         89**********************9 PP
4zf-C2H215.35.8e-05170194123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp   Cgk++ + + Lk+Hi +H
  Potri.003G010400.1 170 HICPysECGKRYAHEYKLKNHIASH 194
                         68*********************96 PP
5zf-C2H2130.00031233258123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         y Cp   C k + + + Lk H+r+ H
  Potri.003G010400.1 233 YICPyeGCEKDYIHEYKLKLHLRReH 258
                         89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.0E-1476107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78381110IPR007087Zinc finger, C2H2
SMARTSM003550.003781105IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.23E-883134No hitNo description
PROSITE patternPS00028083105IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-14108130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0024110134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.921110139IPR007087Zinc finger, C2H2
PROSITE patternPS000280112134IPR007087Zinc finger, C2H2
SuperFamilySSF576675.35E-14121173No hitNo description
Gene3DG3DSA:3.30.160.603.7E-20131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.695140169IPR007087Zinc finger, C2H2
SMARTSM003553.1E-4140164IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-8165196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949170199IPR007087Zinc finger, C2H2
SMARTSM003550.035170194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280172195IPR007087Zinc finger, C2H2
SuperFamilySSF576672.35E-5228256No hitNo description
Gene3DG3DSA:3.30.160.605.1E-9228255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016233258IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.559233263IPR007087Zinc finger, C2H2
PROSITE patternPS000280235258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEAHHHHQFT HNIFERRPII KSKTPAVKWF KEWVPQDVVA TGGKCSLFKW VAENQLNVLK  60
EKAKEPPAPE PEPEPTTEVL FLCSFEGCGK TFIDAGALRK HSHIHGERQY VCHYEGCGKK  120
FLDSSKLKRH FLIHTGERDF VCPHEGCGKA FSLDFNLRSH MKTHSQENYH ICPYSECGKR  180
YAHEYKLKNH IASHHEKNPT PDVVRYATPP ERILKNPKPP SGVYGSASSD RPYICPYEGC  240
EKDYIHEYKL KLHLRREHPD HMADENAENA NSNADNEMDE ASDQDAYGGK RVNGKSQKHS  300
RPKPNLKTPP VKIRQRKGSS SSPATLNVVK KPWPVKDDTY EEDSEETEEE DHDNAEDGWR  360
YGGNEDDDEE TEDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-34832544119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.110750.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G010400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485070.0EF148507.1 Populus trichocarpa x Populus deltoides clone WS0131_N16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006389565.10.0zinc finger transcription factor YY1 isoform X1
SwissprotQ2V3L31e-160YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLU7E1K00.0U7E1K0_POPTR; C2H2 family protein
STRINGPOPTR_0022s00900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-143C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]