PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G246100.2
Common NamePOPTR_0002s24750g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 233aa    MW: 26046.3 Da    PI: 10.4168
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G246100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.3e-12109150351
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Potri.002G246100.2 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150
                         79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-4108165IPR001471AP2/ERF domain
PfamPF008475.5E-6108151IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-8109153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-6111155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVSLRRRKLL GLCAGRSSFL TPLPRFFDNG TAPVGSTQNG RSVSVHPLPS DDANQPEEKT  60
IAKVGAGSSN VSASSSSKEQ RSQAYPEQPV KRRKRHRRKH VQNQEPCLMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL SEEEKQELRK FKWDEFLAIT  180
RSAINNKKHK RRIGAGLQKR SETTLQDGDW DAKDGLNGFS ASEDVEPDSS AS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G246100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303060.21e-174ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_006386877.11e-174ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_006386878.11e-174ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024451173.11e-174ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024451174.11e-174ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP91e-47ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLB9GQL71e-172B9GQL7_POPTR; ERF family protein
STRINGPOPTR_0002s24750.41e-173(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-49ERF family protein