PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G243300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 295aa    MW: 33991.1 Da    PI: 5.9301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G243300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.31.1e-1933120286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt+qe+ +Li+a++e++ +l+rg+lk+ +Weev+  +           ++s++qC++k+e+l++ry+ +k+ +  +    +  ++yfd ++
  Potri.002G243300.1  33 WTHQETIHLIQAYQEKWYSLKRGQLKASQWEEVAVTVaarcgyDYNHPSKSAVQCRHKMEKLRRRYRDEKRVMALG---GTCYWQYFDLMD 120
                         ***********************************998666654445589************************97...5669*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-1932122No hitNo description
PROSITE profilePS500906.0983295IPR017877Myb-like domain
SMARTSM005952.9E-740127IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSTPSPSPSP PPPHSPPTNP TPLSSKKTQP LPWTHQETIH LIQAYQEKWY SLKRGQLKAS  60
QWEEVAVTVA ARCGYDYNHP SKSAVQCRHK MEKLRRRYRD EKRVMALGGT CYWQYFDLMD  120
SLERGPLPIS AQPLARVPCQ ENYHTRNRNN GVLGEYDDDK GEDEDDDDDE DYGYRSKLRS  180
RSINYILRKP SIVNRYAGGG PSGVSREAEK KRKREEVEEE EEEEEEEEEG EGVEMGLAGQ  240
IKAFSERMVK LERKKLEVMK ETERSRMEME NKKLEMILDS HSKIVHMIGE AFGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G243300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450635.10.0trihelix transcription factor ASIL1
TrEMBLA0A2K2BNT60.0A0A2K2BNT6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s24480.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-53Trihelix family protein