PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G180300.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 340aa    MW: 38230.5 Da    PI: 8.1414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G180300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.2e-12147198155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+ +N+ ++ Lr+ +P++   + ++ + a+i   A++++k+L+
  Potri.002G180300.3 147 QRMNHIAVERKRRRLMNDHLNSLRSFMPPS---YVQRGDQASIIGGAIDFVKELE 198
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-16137212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-12145202No hitNo description
PROSITE profilePS5088814.723146197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-13147210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-9152203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MPFLQMLQTV ETPPTFPFKE PCFQTLLKLQ HLKKPWNMNN YYMPETESQV QPPELESCVT  60
HDIFDLHSPV KSETRELPNP HSNSCLGGVS PEPAEPYSGS LIPLGTQPQT VPNIKTQFSK  120
STTIITRERR KRKRTRPTKN KEEVESQRMN HIAVERKRRR LMNDHLNSLR SFMPPSYVQR  180
GDQASIIGGA IDFVKELEQL LQSLEAQKRM KEIEAGSTIG ISSNQYFTSP PQSDNLAEKG  240
GKCEEKRTVK KKSEAAEIEV TAVQNHVNLK IKCQRSLGQL ARAIVALEEL SLTVLHLNIS  300
SSQATILYSF NLKLEDDCEL GSTDEVAAAV HQIFSSFNG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133RRKRKR
2155159RKRRR
3156160KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.88370.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G180300.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450771.10.0transcription factor bHLH70 isoform X3
TrEMBLA0A2K2BKL10.0A0A2K2BKL1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10190.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.17e-72bHLH family protein