PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G180300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 393aa    MW: 44399.5 Da    PI: 7.3123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G180300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12200251155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+ +N+ ++ Lr+ +P++   + ++ + a+i   A++++k+L+
  Potri.002G180300.1 200 QRMNHIAVERKRRRLMNDHLNSLRSFMPPS---YVQRGDQASIIGGAIDFVKELE 251
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-16190265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-12198255No hitNo description
PROSITE profilePS5088814.723199250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9200251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-13200263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-9205256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MKVGFSPHLL RRLGFLGEHN LDLECLDQGF INTESLRFGE ERPYFSSPIF DEKMPFLQML  60
QTVETPPTFP FKEPCFQTLL KLQHLKKPWN MNNYYMPETE SQVQPPELES CVTHDIFDLH  120
SPVKSETREL PNPHSNSCLG GVSPEPAEPY SGSLIPLGTQ PQTVPNIKTQ FSKSTTIITR  180
ERRKRKRTRP TKNKEEVESQ RMNHIAVERK RRRLMNDHLN SLRSFMPPSY VQRGDQASII  240
GGAIDFVKEL EQLLQSLEAQ KRMKEIEAGS TIGISSNQYF TSPPQSDNLA EKGGKCEEKR  300
TVKKKSEAAE IEVTAVQNHV NLKIKCQRSL GQLARAIVAL EELSLTVLHL NISSSQATIL  360
YSFNLKLEDD CELGSTDEVA AAVHQIFSSF NG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186RRKRKR
2208212RKRRR
3209213KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.88370.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G180300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450769.10.0transcription factor bHLH70 isoform X1
TrEMBLA0A2K2BKJ00.0A0A2K2BKJ0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-72bHLH family protein