PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G164400.2

Common Name

POPTR_0002s16590g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 311aa MW: 33811.2 Da PI: 8.1305

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G164400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.6	1.6e-30	141	199	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+ Potri.002G164400.2 141 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPGMFIVTYTAEHNHP 199 79***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-30	131	201	IPR003657	WRKY domain
PROSITE profile	PS50811	35.049	135	201	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-26	138	201	IPR003657	WRKY domain
SMART	SM00774	1.0E-36	140	200	IPR003657	WRKY domain
Pfam	PF03106	1.8E-25	142	199	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MEDIDWDLHA VVRGCTTSTS TSTTATTTIN SNSNRNGTTS DPFETRNVIG ELDELYKPFF 60 PKTQPLLYSP QACTPISSFS SFASFNKDLQ TQPKQQQKKS QPKQSLAGSV TSSGNSHTPR 120 SKRRKNQLKK VCQVPAEALS SDVWAWRKYG QKPIKGSPYP RGYYRCSSSK GCLARKQVER 180 NRSDPGMFIV TYTAEHNHPA PTHRNSLAGS TRQKTSTPQA GTSNDSNKPS SPAQPTCSSP 240 ATSLEDELLV QNDDEDELAG FSEIAVSDDF FAGLEEFVVP ATGFFSDHFP ASFGLPWHAN 300 NNAATAAGSI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-22	125	202	2	80	Disease resistance protein RRS1
5w3x_D	1e-22	125	202	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G164400.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ377443	0.0	GQ377443.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006386616.2	0.0	WRKY transcription factor 22
Swissprot	O04609	1e-93	WRK22_ARATH; WRKY transcription factor 22
TrEMBL	A0A3S9LKD6	0.0	A0A3S9LKD6_POPTO; WRKY family transcription factor 22
STRING	POPTR_0002s16590.1	1e-180	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	7e-88	WRKY family protein

Link Out ? help Back to Top
Phytozome	Potri.002G164400.2
Entrez Gene	7457359

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Kloth KJ, et al. AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling. J. Exp. Bot., 2016. 67(11): p. 3383-96 [PMID:27107291] Camborde L, et al. Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy. Nat Protoc, 2017. 12(9): p. 1933-1950 [PMID:28837131] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]