PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G154100.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 593aa    MW: 66353.1 Da    PI: 4.4915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G154100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.31e-251110834127
                 NAM  34 ikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkr.knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektd 120
                         ++ev+++++ePwdLp k  ++  ++ewyfF++rd ky++++r  nr+tk+gyWk t k k++++  +++++g+ ktL+fyk  +pk  +t 
  Potri.002G154100.2  11 MAEVNLCEHEPWDLPnKsIINLADQEWYFFCPRDLKYKKKSRlCNRKTKAGYWKLTCKIKPIMAGhTKKNIGVMKTLTFYKTARPKDARTG 101
                         899***********95345666999*************98883588*****************9867778********************* PP

                 NAM 121 Wvmheyr 127
                         W++ e+ 
  Potri.002G154100.2 102 WMIYEFD 108
                         *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.661129IPR003441NAC domain
SuperFamilySSF1019411.2E-2811127IPR003441NAC domain
PfamPF023651.0E-1025108IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MNSDFSSGVP MAEVNLCEHE PWDLPNKSII NLADQEWYFF CPRDLKYKKK SRLCNRKTKA  60
GYWKLTCKIK PIMAGHTKKN IGVMKTLTFY KTARPKDART GWMIYEFDIV TNSSLSKKGQ  120
YVLCRLENRS DERIKKGEQN HLMASVSVSE AVPGQSMTSD FENQNSSEMV VSLASDDSEL  180
SHHMGSDSGN QNSSELTPAR QVSELSHYMA SDFRNQNSCK SGSNLAYDGS GSCHSTAFNS  240
ETQYRNQPTV GSVCIVNKNH YMAFDLENQN PNELLTVDSV YTVSKNHYMA PNELPTVDSA  300
YTVSKNHYMA FDLENQNPNE LLTVDSVYTV SKNHYMAPNE LPTVDSAYTV SNNHYMAFDS  360
EYQNPNELLT ADSAYIVDKN HYMAFDSEYQ KPNELLTADS VYDVSESQYM PFDSENQNLN  420
NINSISTYEN SLMASHGFEN KNPPFPPEGE CGTSVVMPFK FINQSTYDES ELSSLLASDF  480
GNQNLDKEIN LSAFDEGEWS SLTAIPSDFG NQNPSKKADI STHEEGYSSY LTAPFSENNL  540
ADVSLPDVSP ELLAGALEAI FEQKKSPNTV LQPPVCVEES HSYMDYDTST ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-20913244171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G154100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826730.0AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301327.20.0NAC domain-containing protein 53 isoform X1
TrEMBLA0A2K2BJ930.0A0A2K2BJ93_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.27e-28TCV-interacting protein