PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G148900.1
Common NamePOPTR_0002s14970g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 213aa    MW: 23136.3 Da    PI: 8.1714
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G148900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-39111111100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+k+C++apyf  +q +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA  r+rdPv+G+vg+i++lqqq+++l
  Potri.002G148900.1  11 PCGACKFLRRKCVKGCIFAPYFDPDQgTAHFAAVHKVFGASNASKLLLRIPTHKRLDAVVTLCYEALTRVRDPVHGCVGHIFTLQQQVMNL 101
                         7*********************777769*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +aela+++++
  Potri.002G148900.1 102 QAELAYIQAH 111
                         *****99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.10210112IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-3811109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSASANNGSG PCGACKFLRR KCVKGCIFAP YFDPDQGTAH FAAVHKVFGA SNASKLLLRI  60
PTHKRLDAVV TLCYEALTRV RDPVHGCVGH IFTLQQQVMN LQAELAYIQA HLSTLQCLPF  120
PQQPPLCAQS HSLMSLSSSS EVPSFSKLAS NSNISMHFDQ LQLQPQQASA ESTGFYNPSE  180
HGIDNNEDLH ELARAFASRC LPGVRFRPPN SP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3721171116LOB family transfactor Ramosa2.1
5ly0_B3e-3721171116LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G148900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302539.21e-156LOB domain-containing protein 19
SwissprotO813222e-71LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2K2BIZ71e-155A0A2K2BIZ7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06580.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.17e-62LOB domain-containing protein 31