PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G136400.5 | ||||||||
Common Name | POPTR_0002s13720g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 229aa MW: 25275.5 Da PI: 8.0542 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 63 | 117 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +e+ LAk+l+L rqV vWFqNrRa+ k Potri.002G136400.5 63 RKKLRLSKEQSSVLEENFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTK 117 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.7 | 2.1e-40 | 63 | 152 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL kev+eLr +l Potri.002G136400.5 63 RKKLRLSKEQSSVLEENFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKTCCENLTEENRRLLKEVQELR-AL 152 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.5E-11 | 1 | 36 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 4.71E-19 | 52 | 120 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-18 | 57 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.556 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-15 | 61 | 123 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.5E-16 | 63 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.49E-16 | 63 | 120 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.2E-24 | 119 | 162 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.0E-10 | 119 | 153 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MNRVPAAVAD CDDETGVSSP NSTLSSLISG KRSEREQIGE ETEAERASCS RGSDDEDGGD 60 ASRKKLRLSK EQSSVLEENF KEHNTLNPKE KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ 120 TEVDCEYLKT CCENLTEENR RLLKEVQELR ALKLSPQLYM HMNPPTTLTM CPSCKRVVSS 180 ASSSSAAVVS SALAPIASTP QPQRPVPINP WAAMPIHHRT FDAPASSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 67 | SRKKLRL |
2 | 111 | 119 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G136400.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450828.1 | 1e-166 | homeobox-leucine zipper protein HAT3 isoform X2 | ||||
Swissprot | P46602 | 1e-92 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | B9GP51 | 1e-165 | B9GP51_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s13720.1 | 1e-166 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 3e-85 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G136400.5 |
Entrez Gene | 7483791 |
Publications ? help Back to Top | |||
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