PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G136400.4
Common NamePOPTR_0002s13720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 304aa    MW: 33870.3 Da    PI: 8.5746
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G136400.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.62.1e-13130192256
                         T--SS--HHHHHHHHHHHHHSSS--........HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknryps........aeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq  +Lee F+++++++        ++e+  LAk+l+L  rqV vWFqNrRa+ k
  Potri.002G136400.4 130 RKKLRLSKEQSSVLEENFKEHNTLNpyvvvlwlQKEKLALAKQLNLRPRQVEVWFQNRRARTK 192
                         788899*************87777733334444578899**********************98 PP
2HD-ZIP_I/II112.33.2e-36130227191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep........erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                         +kk+rlskeq+++LEe+F+e+++L+p        ++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL ke
  Potri.002G136400.4 130 RKKLRLSKEQSSVLEENFKEHNTLNPyvvvlwlqKEKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKTCCENLTEENRRLLKE 220
                         69***********************86666666578999**************************************************** PP

         HD-ZIP_I/II  84 veeLreel 91 
                         v+eLr +l
  Potri.002G136400.4 221 VQELR-AL 227
                         ****9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.4E-351103IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.6E-15110192IPR009057Homeodomain-like
SuperFamilySSF466894.02E-14120195IPR009057Homeodomain-like
PROSITE profilePS5007114.641126194IPR001356Homeobox domain
SMARTSM003899.1E-10128198IPR001356Homeobox domain
PfamPF000466.0E-11130192IPR001356Homeobox domain
CDDcd000868.94E-13130195No hitNo description
PROSITE patternPS000270169192IPR017970Homeobox, conserved site
PfamPF021831.6E-10194228IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.2E-24194237IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGDKNDGLGL SLSLGYATQR NHHQQPSLKL NLMPLASQNK HKKTSWTDLF QSPDRTCDTR  60
LFQRGIDMNR VPAAVADCDD ETGVSSPNST LSSLISGKRS EREQIGEETE AERASCSRGS  120
DDEDGGDASR KKLRLSKEQS SVLEENFKEH NTLNPYVVVL WLQKEKLALA KQLNLRPRQV  180
EVWFQNRRAR TKLKQTEVDC EYLKTCCENL TEENRRLLKE VQELRALKLS PQLYMHMNPP  240
TTLTMCPSCK RVVSSASSSS AAVVSSALAP IASTPQPQRP VPINPWAAMP IHHRTFDAPA  300
SSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134SRKKLRL
2186194RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G136400.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450827.10.0homeobox-leucine zipper protein HAT3 isoform X1
SwissprotP466021e-101HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLB9GP510.0B9GP51_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13720.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.15e-85homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]