PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G136400.2
Common NamePOPTR_0002s13720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 296aa    MW: 32869 Da    PI: 8.5797
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G136400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.2e-18130184256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq  +Lee F+++++++ +e+  LAk+l+L  rqV vWFqNrRa+ k
  Potri.002G136400.2 130 RKKLRLSKEQSSVLEENFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTK 184
                         788899***********************************************98 PP
2HD-ZIP_I/II124.93.6e-40130219191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+++LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL kev+eLr +l
  Potri.002G136400.2 130 RKKLRLSKEQSSVLEENFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKTCCENLTEENRRLLKEVQELR-AL 219
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.1E-351103IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466897.7E-19119187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-18124189IPR009057Homeodomain-like
PROSITE profilePS5007117.556126186IPR001356Homeobox domain
SMARTSM003891.5E-15128190IPR001356Homeobox domain
PfamPF000461.0E-15130184IPR001356Homeobox domain
CDDcd000861.66E-15130187No hitNo description
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
PfamPF021831.5E-10186220IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.2E-24186229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGDKNDGLGL SLSLGYATQR NHHQQPSLKL NLMPLASQNK HKKTSWTDLF QSPDRTCDTR  60
LFQRGIDMNR VPAAVADCDD ETGVSSPNST LSSLISGKRS EREQIGEETE AERASCSRGS  120
DDEDGGDASR KKLRLSKEQS SVLEENFKEH NTLNPKEKLA LAKQLNLRPR QVEVWFQNRR  180
ARTKLKQTEV DCEYLKTCCE NLTEENRRLL KEVQELRALK LSPQLYMHMN PPTTLTMCPS  240
CKRVVSSASS SSAAVVSSAL APIASTPQPQ RPVPINPWAA MPIHHRTFDA PASSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134SRKKLRL
2178186RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G136400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450828.10.0homeobox-leucine zipper protein HAT3 isoform X2
SwissprotP466021e-104HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLB9GP510.0B9GP51_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13720.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.13e-97homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]