PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G100600.1
Common NamePOPTR_0002s10080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 266aa    MW: 30733.2 Da    PI: 6.6827
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G100600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.44.9e-1857110356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++ +q+++Le+ Fe ++++  e++ +LA +lgL+ rqV +WFqNrRa++k
  Potri.002G100600.1  57 KKRRLNLHQVKALEKNFEVENKLEPERKLKLAGELGLQPRQVAIWFQNRRARWK 110
                         4557899**********************************************9 PP
2HD-ZIP_I/II123.41.1e-3956148193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl+ +qvk+LE++Fe e+kLeperK +la eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk++y+alk + ++Le+++e L++++
  Potri.002G100600.1  56 EKKRRLNLHQVKALEKNFEVENKLEPERKLKLAGELGLQPRQVAIWFQNRRARWKTKQLERDYGTLKANYEALKLDYCNLEQKNEVLAQKV 146
                         69**************************************************************************************999 PP

         HD-ZIP_I/II  92 ke 93 
                         ke
  Potri.002G100600.1 147 KE 148
                         87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1940114IPR009057Homeodomain-like
PROSITE profilePS5007116.64952112IPR001356Homeobox domain
SMARTSM003891.4E-1655116IPR001356Homeobox domain
CDDcd000863.88E-1457113No hitNo description
PfamPF000462.0E-1557110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1860119IPR009057Homeodomain-like
PRINTSPR000312.0E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000312.0E-592108IPR000047Helix-turn-helix motif
PfamPF021839.2E-14112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKRFNSSDPL AAFISISSSK EERTQKTNQG YSRDFQSMLD SLEEEDYSEA ASHVGEKKRR  60
LNLHQVKALE KNFEVENKLE PERKLKLAGE LGLQPRQVAI WFQNRRARWK TKQLERDYGT  120
LKANYEALKL DYCNLEQKNE VLAQKVKELK AKLSEENVDS SHSVKEEHRV SESDNNASVH  180
SKNRDFSEKN NSSAITKDHS NISSSHELMN LFQLSDSRVI LGNIYQVYQP HLMKPEEQSL  240
FSTEESCNFF SVDQAPTLHC YFPEH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.120470.0bud| catkin| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G100600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302314.10.0homeobox-leucine zipper protein ATHB-6 isoform X1
TrEMBLB9GUZ90.0B9GUZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.18e-61homeobox protein 16