PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G090700.2 | ||||||||
Common Name | POPTR_0002s09130g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 357aa MW: 39954.9 Da PI: 6.803 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.6 | 4.1e-11 | 74 | 114 | 2 | 39 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLe 39 +++k +rr+++NReAAr+sR+RKka++++Le k ++Le Potri.002G090700.2 74 PADKIQRRLAQNREAARKSRLRKKAYVQQLESsrlKLAQLE 114 57999*************************98333344444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.7E-8 | 68 | 119 | No hit | No description |
SMART | SM00338 | 4.0E-8 | 73 | 136 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.8E-8 | 75 | 112 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.105 | 75 | 119 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.45E-7 | 77 | 117 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 80 | 95 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.2E-30 | 164 | 240 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGSTSTQIAA MRGMGFYEPF HQISSWGHAY RDDGSLNIGP STIVQVDAGL DNKTEHVSQE 60 SMEPSRSDQE AHKPADKIQR RLAQNREAAR KSRLRKKAYV QQLESSRLKL AQLEQELERA 120 RHQGAYIGGS ASDSSHLGFS GTGNPGIAAF EMEYGHWVEE QLKQVSELRN ALQARITDIE 180 LRILVENGLN HYNNLFRMKT DAAKADVFYL ISGKWRTSVE RFFLWIGGFR PSELLNVLMS 240 QLEPLTDQQL ADVCNLRQSS QQAEDALTQG IDKLQQTLSQ SIAADVMGDG GYGDKMADEL 300 EGFVNQADHL RQQTLHHMSR ILTIRQAARG LLALGEYFHR LRTLSSLWAA RPCEPA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11053 | 0.0 | bud| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G090700.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145013 | 0.0 | EF145013.1 Populus trichocarpa clone WS0111_I20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302269.3 | 0.0 | transcription factor TGA7 | ||||
Swissprot | Q93ZE2 | 1e-155 | TGA7_ARATH; Transcription factor TGA7 | ||||
TrEMBL | A0A2K2BFW6 | 0.0 | A0A2K2BFW6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s09130.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77920.1 | 1e-158 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G090700.2 |
Entrez Gene | 7463191 |
Publications ? help Back to Top | |||
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