PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G070700.1
Common NamePOPTR_0002s07150g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 302aa    MW: 34180.8 Da    PI: 4.4635
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G070700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof112.91.5e-353186661
              zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                         +cprC s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvP Ggg+rk +++
  Potri.002G070700.1 31 PNCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPAGGGCRKYRRA 86
                        58**************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-281985IPR003851Zinc finger, Dof-type
PfamPF027011.5E-303185IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.8383185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MYSASDQMMF QCPPRPFPME RKWKSNIEVA PNCPRCASPN TKFCYYNNYS LSQPRYFCKG  60
CRRYWTKGGS LRNVPAGGGC RKYRRARSSK ISQNERAAVS LDYSRANETL ACSSNKDSVA  120
QQDGANGSDI DLAAVFSKFL NQDLSYGPEF IGEELRDEGS ELVNISNSST PISDSYQNDP  180
MMESLKRSDL TQESNLLEGR SQVLVGEKQQ FEEDQRFQEL IESQDMNAFG LQNLLIDEIV  240
QDALWSDDAT LPHVPNWQPM VQLQDFDSFS VDDRLKISAN FTSDDNWSSF DLSGFEVFPR  300
P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ESLKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.122500.0bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G070700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2227460.0CU222746.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451995.10.0dof zinc finger protein DOF1.2
TrEMBLA0A2K2BES30.0A0A2K2BES3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s07150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.12e-45Dof family protein