PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G068700.1

Common Name

POPTR_0002s06930g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 421aa MW: 48443.9 Da PI: 6.5121

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G068700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.1	1.8e-26	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+++v++Li+a+++++e+ +++ +kk++W++vsk+m+ergf++sp+qC++k+++lnkryk+++++ +++ +++++++ Potri.002G068700.1 121 KWTDKMVRLLITAVSYIGEDGTSDCgggmrrkftvlQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCQVVENP 211 7*******************99888999999999********************************************569999888 PP trihelix 80 pyfdql 85 +++d + Potri.002G068700.1 212 ALLDVI 217 887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-23	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MEGNLSQGGM IPGGAPFGGL DLQGSMRVHH QAQHPHTMHH HQHPLHRQGS STLTSVEEGF 60 PLTMGFMHNS DQNISMTDYN KGDRGKNSVS DEDEPSYTEE GADGHNDAIT GKKGTPWQRV 120 KWTDKMVRLL ITAVSYIGED GTSDCGGGMR RKFTVLQKKG KWKSVSKVMA ERGFHVSPQQ 180 CEDKFNDLNK RYKRLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILNSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ RSLQLALRSR DDHDNDDARR HQHDDLDEDD QEIETDDHDE 300 FEENHASHGD CRGIHGVLGG SAKRPRQGQG HEDAFSPESS KAVWLQKQWM ESRTLQLEER 360 KLQIQQEMLE LEKQRFKWQR FSKKRDRELE KLRMENERIK LENEQMALEL KRKEMGADFN 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MEGNLSQGGM IPGGAPFGGL DLQGSMRVHH QAQHPHTMHH HQHPLHRQGS STLTSVEEGF  60
PLTMGFMHNS DQNISMTDYN KGDRGKNSVS DEDEPSYTEE GADGHNDAIT GKKGTPWQRV  120
KWTDKMVRLL ITAVSYIGED GTSDCGGGMR RKFTVLQKKG KWKSVSKVMA ERGFHVSPQQ  180
CEDKFNDLNK RYKRLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILNSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ RSLQLALRSR DDHDNDDARR HQHDDLDEDD QEIETDDHDE  300
FEENHASHGD CRGIHGVLGG SAKRPRQGQG HEDAFSPESS KAVWLQKQWM ESRTLQLEER  360
KLQIQQEMLE LEKQRFKWQR FSKKRDRELE KLRMENERIK LENEQMALEL KRKEMGADFN  420
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G068700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024451284.1	0.0	uncharacterized protein LOC7467820
TrEMBL	A0A2K2BEQ0	0.0	A0A2K2BEQ0_POPTR; Uncharacterized protein
STRING	POPTR_0002s06930.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57
Representative plant	OGRP2796	13	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-151	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Potri.002G068700.1
Entrez Gene	7467820