PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G061300.3
Common NamePOPTR_0002s06210g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 534aa    MW: 61030.2 Da    PI: 4.5327
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G061300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.65.7e-54171432128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         ppGfrFhPtdeelvv+yLk+k+ +k+l+l ++i+evd+yk++P++Lp +  +k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+
  Potri.002G061300.3  17 PPGFRFHPTDEELVVYYLKRKICKKRLKL-NIIREVDVYKWDPEELPgQsILKTGDRQWFFFSPRDRKYPNGARTNRATRQGYWKATGKDR 106
                         8****************************.89**************96446788999********************************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          v++ ++++vg+kktLvfy+grap+g +tdWvmhey+l
  Potri.002G061300.3 107 IVVC-NSRNVGVKKTLVFYRGRAPNGDRTDWVMHEYSL 143
                         ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6111166IPR003441NAC domain
PROSITE profilePS5100556.05616166IPR003441NAC domain
PfamPF023651.3E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MTVNADSCFG ADDKEWPPGF RFHPTDEELV VYYLKRKICK KRLKLNIIRE VDVYKWDPEE  60
LPGQSILKTG DRQWFFFSPR DRKYPNGART NRATRQGYWK ATGKDRIVVC NSRNVGVKKT  120
LVFYRGRAPN GDRTDWVMHE YSLDEEELKR CSNVQDYYAL YKVYKKSGAG PKNGEHYGAP  180
FKEEDWADDE FQCVNGMFTP DIPVKKHNEV TLVDNFIQSA QLEPPLNDFE EIIKQIGEEP  240
AHNELQNNDF TYLLPQVTGE EEAQSTLVDP SFREFVCEPA GELTTSGQHC NKHTSFNFDQ  300
SGTATLQLHE APEVTSGTNY EQAPQLNEED FLEINDLIDP EPSFSNTEQP VENLQFDDFD  360
GLSEFDLYHD AAMFLRDMGP VDQEAVSHSY MHPYGCDMVN QVGYQLQPDS IINAVDYQLQ  420
QSNLVANQVD CDLQPQFFDA EQMNNQLWVH GQRSNMLAAS ESHNGNLFQP TPAIILPEPT  480
EIKVEKRVML LMVGSLLPCG VLWSPSLLLL RQLQRIHWLI RLLSECQASA GSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-501717218171NO APICAL MERISTEM PROTEIN
1ut4_B1e-501717218171NO APICAL MERISTEM PROTEIN
1ut7_A1e-501717218171NO APICAL MERISTEM PROTEIN
1ut7_B1e-501717218171NO APICAL MERISTEM PROTEIN
4dul_A1e-501717218171NAC domain-containing protein 19
4dul_B1e-501717218171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13443KRKICKKRLK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G061300.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302150.10.0NAC domain-containing protein 17 isoform X2
TrEMBLB9GT490.0B9GT49_POPTR; Uncharacterized protein
STRINGPOPTR_0002s06210.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-114NAC domain containing protein 17