PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G061300.2 | ||||||||
Common Name | POPTR_0002s06210g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 610aa MW: 68535.1 Da PI: 4.6173 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.3 | 7.1e-54 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppGfrFhPtdeelvv+yLk+k+ +k+l+l ++i+evd+yk++P++Lp + +k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+ Potri.002G061300.2 17 PPGFRFHPTDEELVVYYLKRKICKKRLKL-NIIREVDVYKWDPEELPgQsILKTGDRQWFFFSPRDRKYPNGARTNRATRQGYWKATGKDR 106 8****************************.89**************96446788999********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v++ ++++vg+kktLvfy+grap+g +tdWvmhey+l Potri.002G061300.2 107 IVVC-NSRNVGVKKTLVFYRGRAPNGDRTDWVMHEYSL 143 ****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-61 | 11 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.056 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MTVNADSCFG ADDKEWPPGF RFHPTDEELV VYYLKRKICK KRLKLNIIRE VDVYKWDPEE 60 LPGQSILKTG DRQWFFFSPR DRKYPNGART NRATRQGYWK ATGKDRIVVC NSRNVGVKKT 120 LVFYRGRAPN GDRTDWVMHE YSLDEEELKR CSNVQDYYAL YKVYKKSGAG PKNGEHYGAP 180 FKEEDWADDE FQCVNGMFTP DIPVKKHNEV TLVDNFIQSA QLEPPLNDFE EIIKQIGEEP 240 AHNELQNNDF TYLLPQVTGE EEAQSTLVDP SFREFVCEPA GELTTSGQHC NKHTSFNFDQ 300 SGTATLQLHE APEVTSGTNY EQAPQLNEED FLEINDLIDP EPSFSNTEQP VENLQFDDFD 360 GLSEFDLYHD AAMFLRDMGP VDQEAVSHSY MHPYGCDMVN QVGYQLQPDS IINAVDYQLQ 420 QSNLVANQVD CDLQPQFFDA EQMNNQLWVH GQRSNMLAAS ESHNGNLFQP TPGVVCESSN 480 NSTRTNGNQG GKEGDAADGW FSSALWGFVE SIPTTPASAS ENPLVNKAFE RMSSFSRIKM 540 NVKSINVDAA SRIRMNVNSI NVVAANGAAS VRSASRNKGF VLLSIVGVLC AILWVFVGSG 600 RLLGRSISS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-50 | 17 | 172 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-50 | 17 | 172 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-50 | 17 | 172 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-50 | 17 | 172 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-50 | 17 | 172 | 18 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-50 | 17 | 172 | 18 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 43 | KRKICKKRLK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G061300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302150.1 | 0.0 | NAC domain-containing protein 17 isoform X2 | ||||
TrEMBL | B9GT49 | 0.0 | B9GT49_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s06210.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-146 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G061300.2 |
Entrez Gene | 7480733 |