PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G059100.2
Common NamePOPTR_0002s06000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 325aa    MW: 36494.3 Da    PI: 7.5849
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G059100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.8e-33181238259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  Potri.002G059100.2 181 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSFQDPSLVITTYEGQHNHH 238
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-34165240IPR003657WRKY domain
SuperFamilySSF1182904.45E-29173240IPR003657WRKY domain
PROSITE profilePS5081132.202175240IPR003657WRKY domain
SMARTSM007743.8E-39180239IPR003657WRKY domain
PfamPF031064.3E-26181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSNEKEDPYN YDPFYYNIQH RTNRPVSVFP FFNDNNLSVY NQQAPTQSLQ GFDDPPYMSF  60
TDCLHGSVDH YNTLSRALNV SCSSSEVISP IEDGSKKTGA GELSAATNEN LPSTPNSSIS  120
NSSSNDGATE EDSGKIKKDK QPKESEDGDG DAKKVKTKKK EKRQKEPRFA FLTKSEIDNL  180
EDGYRWRKYG QKAVKNSPYP RSYYRCTSQK CTVKKRVERS FQDPSLVITT YEGQHNHHCP  240
ATLRGNATGM LPPSLLASTS IGQSFPQDLL TRLLPASNQQ GDQTSMFYHS LAPQNQQLQQ  300
HQLYSPDYGL LQDLVPSFIH KQQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-281732411078Probable WRKY transcription factor 4
2lex_A2e-281732411078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G059100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302140.10.0probable WRKY transcription factor 71
TrEMBLA0A2K2BE860.0A0A2K2BE86_POPTR; Uncharacterized protein
STRINGPOPTR_0002s06000.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.14e-55WRKY DNA-binding protein 28