PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G056700.1 | ||||||||
Common Name | POPTR_0002s05770g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 226aa MW: 25714 Da PI: 6.7184 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.4 | 1.9e-29 | 18 | 71 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp LHe+Fveave+LGG+ kAtPk+il++m+vk L ++h+kSHLQ+YR+ Potri.002G056700.1 18 PRLRWTPVLHEHFVEAVESLGGKYKATPKRILQMMSVKELRISHIKSHLQMYRS 71 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-27 | 14 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-13 | 16 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-22 | 18 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.8E-7 | 19 | 70 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MKTSEANGAR QYNKSEHPRL RWTPVLHEHF VEAVESLGGK YKATPKRILQ MMSVKELRIS 60 HIKSHLQMYR SMKGPRNFNV IIPMMKHLQA ERKLLDGKGI SSSFSSQRVL QGERSDSKCD 120 MFSDIESNGI LQAQEEGGDP EQQDSGTSFV GSQSREENID RLPAETCELS LSSFIPSMAS 180 CTTEERELWP LINDQHHREY TSTNKCIIIQ DLQFESNRIN LDLTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-17 | 19 | 73 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-17 | 19 | 73 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-17 | 19 | 73 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-17 | 19 | 73 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-17 | 19 | 73 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-17 | 19 | 73 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-17 | 19 | 73 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-17 | 19 | 73 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-17 | 19 | 73 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-17 | 19 | 73 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-17 | 19 | 73 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-17 | 19 | 73 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G056700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302131.2 | 1e-169 | protein PHOSPHATE STARVATION RESPONSE 1 | ||||
Refseq | XP_024450832.1 | 1e-169 | protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | A0A2K2BE09 | 1e-168 | A0A2K2BE09_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s05770.1 | 1e-167 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9186 | 28 | 39 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 6e-24 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G056700.1 |
Entrez Gene | 7468722 |