PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G045800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 518aa MW: 55971.6 Da PI: 6.16 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.6 | 8.8e-16 | 290 | 344 | 4 | 58 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +kr+rr+q+NRe+ArrsR+RK+a++ eLe+ v +L e+++L ++ +++++ Potri.002G045800.1 290 VKRARRMQSNRESARRSRRRKQAQLNELETQVGQLRDERTSLLSRFTDVNQKCDD 344 69*******************************************9999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-15 | 287 | 351 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.645 | 289 | 341 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-12 | 290 | 343 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.87E-10 | 290 | 340 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-9 | 291 | 342 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 294 | 309 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.2E-39 | 358 | 490 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MNSVFSVDDF SDPFWLSPPP PPSSTDPKMN RSESEWAFEN FLQEMASVPS SASETHTAAP 60 SVLSQSSTSS IPPDNGEDEV VEITKHPIHH HHQHPIPNPH PIPNPHPQPL DRNLTAPIDS 120 EEYRALLKSK LDLACAAVAM SMETNAVKPE VFSSLPEDQR LAARNMSLGT QSFHNGTDQG 180 ISMAQSGADG VSLGIPPLLT TQRKSDDESL GIPALPTTQR KSDDESLGIP ALPTTQRKSD 240 GGSLGIPALP ITQRKQEVQA RQTTSGSSSS DDDDLEGDTG TNENMDPAVV KRARRMQSNR 300 ESARRSRRRK QAQLNELETQ VGQLRDERTS LLSRFTDVNQ KCDDAAVDNR ILKADIETLR 360 AKVKMAEEQV KRVTGLNPVL LARSSMPSPG MPFVGGQVDA STNVAIPMQT NPHQFFHQPV 420 QGITPAPPHL QRLNNSFPKR TLVPLATNPQ TDNGNSNDGG MAVMPSMQLT ADGQSLPAMP 480 SMQQVQKQIG PTVGPAGTLP ACDSGLPHVV AKDYKKK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 303 | 310 | RRSRRRKQ |
2 | 305 | 310 | SRRRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G045800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002300809.3 | 0.0 | light-inducible protein CPRF2 | ||||
TrEMBL | A0A2K2BDD9 | 0.0 | A0A2K2BDD9_POPTR; BZIP family protein | ||||
STRING | POPTR_0005s23900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13691 | 18 | 25 | Representative plant | OGRP1839 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54620.1 | 5e-32 | basic leucine zipper 25 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G045800.1 |