PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G041600.1 | ||||||||
Common Name | POPTR_0002s04250g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 185aa MW: 20759.3 Da PI: 4.7959 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Potri.002G041600.1 33 YECVFCKRGFTTAQALGGHMNIH 55 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.23E-6 | 31 | 59 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-4 | 31 | 59 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.99 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MESNQHDEDS KSSSDEEEIT DRSDQDTGTG RSYECVFCKR GFTTAQALGG HMNIHRKDRA 60 KSRPSSVPSL SSKVDEDYAS FQGYPPIQSY PPHYPTPHEV HINYQTFFPA STTWGIGSPY 120 AQQHNGDFYV QSPHHLYPFG DDWRRSLSLQ TGPSHVDDNT KEKIEDGIGA DDELDLELRL 180 GHDP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G041600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208375 | 0.0 | AC208375.1 Populus trichocarpa clone JGIACSB249-H15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302060.1 | 1e-136 | protein LATE FLOWERING | ||||
TrEMBL | B9GS39 | 1e-135 | B9GS39_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s04250.1 | 1e-135 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 | Representative plant | OGRP1998 | 11 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 3e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G041600.1 |
Entrez Gene | 7479983 |