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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Potri.002G024700.1 | ||||||||
| Common Name | POPTR_0002s02630g | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | ARF | ||||||||
| Protein Properties | Length: 934aa MW: 102070 Da PI: 5.6186 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 75 | 8.5e-24 | 147 | 247 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++Lk+gD+v+F
Potri.002G024700.1 147 FCKALTASDTSTHGGFSVPRRAAEKLfppldySMQPPS-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFI-- 234
99*********************999*****9666554.59************************************************.. PP
SSSEE..EEEEE- CS
B3 86 grsefelvvkvfr 98
++++ +l+v+v+
Potri.002G024700.1 235 RNEKSHLMVGVRH 247
5688889**9986 PP
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| 2 | Auxin_resp | 109 | 4.9e-36 | 273 | 356 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa ++s+F+++YnPra++s+Fv+++ k++k++ ++vsvGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
Potri.002G024700.1 273 AAHAAGNRSPFTIFYNPRACPSDFVIPLIKFRKTVFgTQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 356
79*******************************9987*********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.06E-46 | 134 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 3.4E-41 | 140 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 2.44E-22 | 146 | 246 | No hit | No description |
| PROSITE profile | PS50863 | 12.901 | 147 | 249 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.7E-21 | 147 | 248 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 6.7E-23 | 147 | 249 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 5.2E-31 | 273 | 356 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 2.2E-10 | 812 | 906 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 25.647 | 819 | 903 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 2.85E-8 | 832 | 898 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 934 aa Download sequence Send to blast |
MGSAEEKIKT GGIINGAQTN LLEEMKLLKE FQDQSGTRKA INSELWYACA GPLVSLPQVG 60 SLVYYFPQGH SEQVAVSTKR SATSQIPNYP NLPSQLLCQV HNVTLHADKD TDEIHAQMSL 120 QPVNSEKDVF PVPDFGLKPS KHPSEFFCKA LTASDTSTHG GFSVPRRAAE KLFPPLDYSM 180 QPPSQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSLFV GSKRLKAGDS VLFIRNEKSH 240 LMVGVRHANR QQTTLPSSVL SADSMHIGVL AAAAHAAGNR SPFTIFYNPR ACPSDFVIPL 300 IKFRKTVFGT QVSVGMRFGM MFETEESGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD 360 EPGCSDKQNR VSSWEIETPE SLFIFPSLTS GLKRPLQSGF LGDTEWGGLV KKPLALLPGS 420 GNASLPYASM SNMYSEQLIN MLMKPQAVNY PGICGTALPE VSAVKVGSLD VKNMQAAINQ 480 TPQLNQSGIT PIENQNYSQI CLDQSNAMNS YSSKANVAGK SLSLSKVENQ ASVGGVDGKF 540 KAKPEHLPDQ LSQPTSTGEC IVQKPISCPM TQQNATNHLV FQNQNQGQSQ LQASLWPMQA 600 LTESSLLNSQ QIRASLADAT TPNCSLPFLD AGEWISHPMS IDSMCRSGPL SMFGLQDPSL 660 PFMHQDAWDH QMSNLRILSE ANQLIPLAQQ EPCSFNSGAV KDSSDESNDQ SGIYGSLNID 720 ASNGGGSVYD RSVSSAILDE FCTLKDADLQ NASDCLVGNL SSSQDVQSQI TSASLADSQA 780 FSRQDFPDNS GGTSSSNIEF DNSNLLQNNS WQQVAPRVRT YTKVQKTGSV GRSIDVSSFK 840 NYEELCSAIE CMFGLDGLLN NPKGSGWKLV YVDYENDVLL IGDDPWEEFV GCVRCIRILS 900 PSEVQQMSEE GMKLLNSANI QGINTPITEG IHA* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 1 | 381 | 5 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Pth.11883 | 0.0 | bud | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: In early embryo and during organ development. | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant with a lower expression in leaves. Detected in embryo axis, provascular tissues, procambium and some differentiated vascular regions of mature organs. {ECO:0000269|PubMed:10476078}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Potri.002G024700.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002300719.3 | 0.0 | auxin response factor 5 isoform X1 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A2K2BCD3 | 0.0 | A0A2K2BCD3_POPTR; Auxin response factor | ||||
| STRING | POPTR_0002s02630.1 | 0.0 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8991 | 32 | 41 | Representative plant | OGRP8260 | 12 | 16 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Potri.002G024700.1 |
| Entrez Gene | 7490662 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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