PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G005600.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 510aa MW: 57135.6 Da PI: 6.5179 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24 | 9e-08 | 452 | 507 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 r++WT++E++ l+++v+++ + W++I + +Rt+ ++k++w++ Potri.002G005600.2 452 RLNWTADEEDTLKEGVEKFAIPgnkntPWRKILEFGHrvfdSTRTPTDLKDKWRNM 507 89*****************999999********988899***************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 3.5E-7 | 96 | 160 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 2.44E-8 | 97 | 157 | IPR011011 | Zinc finger, FYVE/PHD-type |
SMART | SM00249 | 0.0055 | 104 | 151 | IPR001965 | Zinc finger, PHD-type |
PROSITE profile | PS51294 | 11.448 | 447 | 509 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.08E-9 | 451 | 508 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-9 | 452 | 509 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-5 | 452 | 507 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.26E-13 | 455 | 509 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
VKNKNKTLRF LSHTLKNQLQ FCAHSKTHLK NPNSGGKMRS KYGGGQRRIS KSPQKPPSSS 60 TLRPFPQLSP DEANSDEDDA NLSEKSSRSD DDVGNGGDWM EVDACLSCNK RGKSKLLVCC 120 VIGCPVSIHE KCANFKLAFD DSGRFCCPYC SYKREVGRAK ELFRKAMLAK KALLGFIDPE 180 MVGGEAKRNG GERAEFDGAE NRDALVEDGL KVSDCDRCEV MVDDEMDGAL PGAVDGSDNG 240 HKSQEEKIPG IESLEDSISN EIRDERNISE THEFETLEGE EGKQEREKDG RILEGGERAE 300 SSKDHYVEKE QKQMQQDGCD DEEQKEQEEK HQDGCDDKEQ GQCVGEEQVH HDAREANSGG 360 GVAAPKAPHV SDSDTGKSVV LRRRVKHIGK KKIAESLDAK LSKEAPPQRH TIDEKEAKIQ 420 KKKVILSKEP RQRLESPKIS SNLYPRNEKR QRLNWTADEE DTLKEGVEKF AIPGNKNTPW 480 RKILEFGHRV FDSTRTPTDL KDKWRNMTK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G005600.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU232360 | 1e-107 | CU232360.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011034802.1 | 0.0 | PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1 | ||||
Refseq | XP_011034803.1 | 0.0 | PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1 | ||||
Refseq | XP_011034805.1 | 0.0 | PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1 | ||||
TrEMBL | A0A3N7EG69 | 0.0 | A0A3N7EG69_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s00710.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 1e-06 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G005600.2 |