PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G005600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 510aa    MW: 57135.6 Da    PI: 6.5179
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G005600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249e-08452507147
                         TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                         r++WT++E++ l+++v+++  +      W++I +        +Rt+ ++k++w++ 
  Potri.002G005600.1 452 RLNWTADEEDTLKEGVEKFAIPgnkntPWRKILEFGHrvfdSTRTPTDLKDKWRNM 507
                         89*****************999999********988899***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.5E-796160IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.44E-897157IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002490.0055104151IPR001965Zinc finger, PHD-type
PROSITE profilePS5129411.448447509IPR017930Myb domain
SuperFamilySSF466894.08E-9451508IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-9452509IPR009057Homeodomain-like
PfamPF002491.9E-5452507IPR001005SANT/Myb domain
CDDcd116602.26E-13455509No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
VKNKNKTLRF LSHTLKNQLQ FCAHSKTHLK NPNSGGKMRS KYGGGQRRIS KSPQKPPSSS  60
TLRPFPQLSP DEANSDEDDA NLSEKSSRSD DDVGNGGDWM EVDACLSCNK RGKSKLLVCC  120
VIGCPVSIHE KCANFKLAFD DSGRFCCPYC SYKREVGRAK ELFRKAMLAK KALLGFIDPE  180
MVGGEAKRNG GERAEFDGAE NRDALVEDGL KVSDCDRCEV MVDDEMDGAL PGAVDGSDNG  240
HKSQEEKIPG IESLEDSISN EIRDERNISE THEFETLEGE EGKQEREKDG RILEGGERAE  300
SSKDHYVEKE QKQMQQDGCD DEEQKEQEEK HQDGCDDKEQ GQCVGEEQVH HDAREANSGG  360
GVAAPKAPHV SDSDTGKSVV LRRRVKHIGK KKIAESLDAK LSKEAPPQRH TIDEKEAKIQ  420
KKKVILSKEP RQRLESPKIS SNLYPRNEKR QRLNWTADEE DTLKEGVEKF AIPGNKNTPW  480
RKILEFGHRV FDSTRTPTDL KDKWRNMTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G005600.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2323601e-107CU232360.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034802.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
RefseqXP_011034803.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
RefseqXP_011034805.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
TrEMBLA0A3N7EG690.0A0A3N7EG69_POPTR; Uncharacterized protein
STRINGPOPTR_0002s00710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Representative plantOGRP1443713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-06MYB_related family protein