PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G472800.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 365aa MW: 39646.5 Da PI: 6.1417 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92 | 4.7e-29 | 93 | 150 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 d gyn rKYGqK+vkgse+prsYY+Ct+++C+vkkkvers +++++ei+Y+g H h+k Potri.001G472800.7 93 DKGYNFRKYGQKQVKGSEYPRSYYKCTHPNCSVKKKVERSL-EGHITEIIYKGAHSHPK 150 569**************************************.***************85 PP | |||||||
2 | WRKY | 36.7 | 8.6e-12 | 304 | 325 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vkg+++pr Potri.001G472800.7 304 LDDGYRWRKYGQKVVKGNPNPR 325 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 20.036 | 87 | 151 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.3E-25 | 90 | 151 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-22 | 90 | 151 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-28 | 92 | 150 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.9E-21 | 95 | 149 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.2E-14 | 289 | 325 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-10 | 296 | 326 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.686 | 299 | 325 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-5 | 304 | 350 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-7 | 305 | 326 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MDVSVHSENA LQSHDVAPAK VQSESRNSLH FPAEFFKLTT EKDNGGNTVA DQRTFDTVGG 60 NAEHSSPLDE QQDEEGDQRA SGDSMAAGGT PSDKGYNFRK YGQKQVKGSE YPRSYYKCTH 120 PNCSVKKKVE RSLEGHITEI IYKGAHSHPK PLPNRRSAVG SLDTQLDIPE QVVPQIGSVN 180 DSAWAGTQKG IAAGTSDWRR DNVEVTSSAS GGPGPEFGNP SSSVQAQSGT PFESADAIDA 240 SSTFSNDEDD DRATHGSVGY DGEGEESESK RRKIETYATE MSGATRAIRE PRVVVQTTSE 300 VDILDDGYRW RKYGQKVVKG NPNPRLLNQH WSLVQTPRPQ IIIILFSCAV GKKSIVHNLK 360 LIIG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-14 | 95 | 151 | 17 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1046 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G472800.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN117933 | 0.0 | JN117933.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY37) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441213.1 | 0.0 | probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_024441219.1 | 0.0 | probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_024441225.1 | 0.0 | probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_024441234.1 | 0.0 | probable WRKY transcription factor 2 isoform X2 | ||||
Swissprot | Q9FG77 | 6e-86 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A2K2CEK5 | 0.0 | A0A2K2CEK5_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A2K2CEK8 | 0.0 | A0A2K2CEK8_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A385JHS0 | 0.0 | A0A385JHS0_POPTO; WRKY DNA-binding protein 2 | ||||
TrEMBL | A0A3N7EI29 | 0.0 | A0A3N7EI29_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s47670.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 3e-88 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G472800.7 |
Publications ? help Back to Top | |||
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