PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G472800.6
Common NamePOPTR_0001s47670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 514aa    MW: 55659.2 Da    PI: 6.8644
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G472800.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.37.7e-2993150260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         d gyn rKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  +++++ei+Y+g H h+k
  Potri.001G472800.6  93 DKGYNFRKYGQKQVKGSEYPRSYYKCTHPNCSVKKKVERSL-EGHITEIIYKGAHSHPK 150
                         569**************************************.***************85 PP
2WRKY104.46.3e-33304362159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Potri.001G472800.6 304 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 362
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.03687151IPR003657WRKY domain
SuperFamilySSF1182902.35E-2290151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-2590151IPR003657WRKY domain
SMARTSM007742.7E-2892150IPR003657WRKY domain
PfamPF031069.7E-2195149IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-37289364IPR003657WRKY domain
SuperFamilySSF1182909.94E-29296364IPR003657WRKY domain
PROSITE profilePS5081138.664299364IPR003657WRKY domain
SMARTSM007741.5E-37304363IPR003657WRKY domain
PfamPF031064.1E-25305362IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MDVSVHSENA LQSHDVAPAK VQSESRNSLH FPAEFFKLTT EKDNGGNTVA DQRTFDTVGG  60
NAEHSSPLDE QQDEEGDQRA SGDSMAAGGT PSDKGYNFRK YGQKQVKGSE YPRSYYKCTH  120
PNCSVKKKVE RSLEGHITEI IYKGAHSHPK PLPNRRSAVG SLDTQLDIPE QVVPQIGSVN  180
DSAWAGTQKG IAAGTSDWRR DNVEVTSSAS GGPGPEFGNP SSSVQAQSGT PFESADAIDA  240
SSTFSNDEDD DRATHGSVGY DGEGEESESK RRKIETYATE MSGATRAIRE PRVVVQTTSE  300
VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TSAGCTVRKH VERASHDLKS VITTYEGKHN  360
HDVPAARNSS HVNSGTSNAT PGQAAVAVQT HVHRHESSQV HNSMARFERP PAFGSFSLPG  420
RQQLGPSPGF SFGMNQPGLA NLAMAGLGQG QPKMPVMPIH PYLAQQHPGN EMGFMMPKEE  480
PKVGPVTEPS LNLSNNRTLY QQIMSRLPLG PQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-3793365878Probable WRKY transcription factor 4
2lex_A4e-3793365878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.10460.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G472800.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441213.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_024441219.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_024441225.10.0probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG771e-143WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2K2CEK50.0A0A2K2CEK5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s47670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-146WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]