PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G472800.5
Common NamePOPTR_0001s47670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 534aa    MW: 57679.4 Da    PI: 6.8645
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G472800.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.1e-29113170260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         d gyn rKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  +++++ei+Y+g H h+k
  Potri.001G472800.5 113 DKGYNFRKYGQKQVKGSEYPRSYYKCTHPNCSVKKKVERSL-EGHITEIIYKGAHSHPK 170
                         569**************************************.***************85 PP
2WRKY104.36.6e-33324382159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Potri.001G472800.5 324 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 382
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.036107171IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-25110171IPR003657WRKY domain
SuperFamilySSF1182902.48E-22110171IPR003657WRKY domain
SMARTSM007742.7E-28112170IPR003657WRKY domain
PfamPF031061.0E-20115169IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-37309384IPR003657WRKY domain
SuperFamilySSF1182901.06E-28316384IPR003657WRKY domain
PROSITE profilePS5081138.664319384IPR003657WRKY domain
SMARTSM007741.5E-37324383IPR003657WRKY domain
PfamPF031064.3E-25325382IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MGESGSSFFL GGTSKQSFPS MDVSVHSENA LQSHDVAPAK VQSESRNSLH FPAEFFKLTT  60
EKDNGGNTVA DQRTFDTVGG NAEHSSPLDE QQDEEGDQRA SGDSMAAGGT PSDKGYNFRK  120
YGQKQVKGSE YPRSYYKCTH PNCSVKKKVE RSLEGHITEI IYKGAHSHPK PLPNRRSAVG  180
SLDTQLDIPE QVVPQIGSVN DSAWAGTQKG IAAGTSDWRR DNVEVTSSAS GGPGPEFGNP  240
SSSVQAQSGT PFESADAIDA SSTFSNDEDD DRATHGSVGY DGEGEESESK RRKIETYATE  300
MSGATRAIRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TSAGCTVRKH  360
VERASHDLKS VITTYEGKHN HDVPAARNSS HVNSGTSNAT PGQAAVAVQT HVHRHESSQV  420
HNSMARFERP PAFGSFSLPG RQQLGPSPGF SFGMNQPGLA NLAMAGLGQG QPKMPVMPIH  480
PYLAQQHPGN EMGFMMPKEE PKVGPVTEPS LNLSNNRTLY QQIMSRLPLG PQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37113385878Probable WRKY transcription factor 4
2lex_A4e-37113385878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.10460.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G472800.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300596.20.0probable WRKY transcription factor 2 isoform X3
SwissprotQ9FG771e-146WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLB9GHY90.0B9GHY9_POPTR; WRKY family protein
STRINGPOPTR_0001s47670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-148WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]