PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G460600.1
Common NamePOPTR_0001s46490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 424aa    MW: 46029.9 Da    PI: 5.9007
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G460600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.7e-31208266259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Potri.001G460600.1 208 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 266
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.787202268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.3E-31205268IPR003657WRKY domain
SuperFamilySSF1182903.01E-26206268IPR003657WRKY domain
SMARTSM007741.4E-37207267IPR003657WRKY domain
PfamPF031068.7E-26209266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDNYQGDLTD ILRASGGALG QSDVPVSNWE FPFDPSSTMG ESRGNLFGDP FCNMRDPLLH  60
ELNVAAGSSY FSSQNSADHV SSILAHQRVF EDHEIHKAAT PPPAPCNIFS RIQISPNNPP  120
KLPVSPCNSP VIATGSSPRG FKASAMVSSD IINVNNSKGC LMENTGQVQI SSPRNMGIKR  180
RKSQAKKVVC IPAPAAANSR PGGEVVPSDL WAWRKYGQKP IKGSPYPRGY YRCSSSKGCS  240
ARKQVERSRT DPNMLVITYT SEHNHPWPTQ RNALAGSTRS QPLKSTAASK SPTGSQSQKT  300
GNTKEEQKES SNDTLSPTNI VGGRSTASAS VKEEFDDIDK QMGMDDNDFS EGFSHSYKPS  360
MPDQSDQDFF AELGEIDADP LDLLFTQEFN GDEQKESKDL DPFSIFDWSG DTNTSFGEAK  420
KGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-25182269280Disease resistance protein RRS1
5w3x_D1e-25182269280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G460600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494240.0AC149424.1 Populus trichocarpa clone Pop1-011N15, complete sequence.
GenBankAC1494250.0AC149425.1 Populus trichocarpa clone Pop1-041F22, complete sequence.
GenBankAC1494260.0AC149426.1 Populus trichocarpa clone Pop1-053A03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458563.10.0probable WRKY transcription factor 14
SwissprotQ9SA801e-108WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLB9GGH30.0B9GGH3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s46490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-110WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]