PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G454500.2
Common NamePOPTR_0001s45870g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 705aa    MW: 76553.6 Da    PI: 9.1283
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G454500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.52.8e-31106190187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  Potri.001G454500.2 106 RWPRQETLALLQIRSEMDAAFRDATLKGPLWEDVSRKLAEMGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 190
                         8*********************************************************************866665..*******85 PP
2trihelix106.91.3e-33522607187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k evlaLi++r+ +e+r++++  k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkrt e+ +tcpyf++l+a
  Potri.001G454500.2 522 RWPKPEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMLRLGYKRSSKRCKEKWENINKYFKKVKESNKKRT-EDAKTCPYFHELDA 607
                         8*********************************************************************96.6667********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.003103165IPR001005SANT/Myb domain
CDDcd122037.17E-29105170No hitNo description
PROSITE profilePS500906.725105163IPR017877Myb-like domain
PfamPF138371.4E-21105191No hitNo description
PROSITE profilePS500907.085515579IPR017877Myb-like domain
SMARTSM007170.023519581IPR001005SANT/Myb domain
PfamPF138373.6E-22521608No hitNo description
CDDcd122034.38E-30521586No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MQQGGGERGS SQSQYAVPQQ QQQQGDMPLP PSTSAALATH MQQQQQVVEE ASPISSRPPA  60
TAATTSGGGV MNLDEFMRLS GGGGGAEEDI AGEDADRTGG IASGNRWPRQ ETLALLQIRS  120
EMDAAFRDAT LKGPLWEDVS RKLAEMGYKR SAKKCKEKFE NVHKYYKRTK EGRAGRQDGK  180
SYRFFSQLEA LQNTGGGGGV SSSISNVSGV APQLIGTATT SSLDVAPVSV GIPMPIRTPP  240
PSSQVPQPAS NIGSMFPPDL GATVARAAAA GAPVRISFSS NESSSSQSSE DDDDDEDEGI  300
LGGQTSAMGA GTSRKRKRAS LSSSKGETHR MMEFFEGLMK QVMQKQEAMQ HRFLEAIEKR  360
EQDRMIRDEA WKRQEMARLS REHEIMAQER SISASRDAAI VAFLQKITGQ TIHLPTPVSI  420
APLVSQPQPP PPTQPQQVQI APLVTVSTQP PLQPQPMPLS QVTPQQNKQL PQQQHHQQQQ  480
HQQVHHQHQP PSISSEIVMA VPEQQIAPLE LGSGGSEPAS SRWPKPEVLA LIKLRSGLET  540
RYQEAGPKGP LWEEISAGML RLGYKRSSKR CKEKWENINK YFKKVKESNK KRTEDAKTCP  600
YFHELDALYR KKILGSSSGG AGSTSTSGFD SQINRPQKQQ HQHQESLELD PMPPPMQQTV  660
PQQTQATESQ NKNGASVDVQ ASNTVLAGSP FGEGNGGAEK KKTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G454500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494300.0AC149430.1 Populus trichocarpa clone Pop1-116F13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300534.30.0trihelix transcription factor GTL1 isoform X2
SwissprotQ391176e-67TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2K2CDN10.0A0A2K2CDN1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s45870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.12e-51GT-2-like 1